Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d039165_P046 | Maize | nucleus | 98.26 | 97.9 |
| Zm00001d009745_P023 | Maize | cytosol, nucleus, plasma membrane, plastid | 94.67 | 93.81 |
| TraesCS1B01G473400.1 | Wheat | nucleus | 93.11 | 93.03 |
| TraesCSU01G002300.1 | Wheat | golgi, plastid | 93.02 | 92.94 |
| TraesCS1D01G445700.1 | Wheat | unclear | 93.02 | 92.94 |
| HORVU1Hr1G094530.1 | Barley | nucleus, plastid | 92.75 | 88.29 |
| CDY70585 | Canola | plastid | 28.19 | 86.48 |
| GSMUA_Achr8P07200_001 | Banana | cytosol, nucleus, plasma membrane | 84.66 | 84.66 |
| KRH43086 | Soybean | nucleus | 15.61 | 83.74 |
| KRH59213 | Soybean | cytosol, plasma membrane, plastid | 38.29 | 83.4 |
| VIT_10s0003g04360.t01 | Wine grape | cytosol, nucleus, plasma membrane | 83.1 | 83.1 |
| AT4G05420.1 | Thale cress | cytosol, nucleus, peroxisome | 82.55 | 82.63 |
| KRH25071 | Soybean | nucleus | 45.18 | 82.41 |
| Bra029577.1-P | Field mustard | nucleus, peroxisome, plastid | 81.82 | 82.04 |
| CDY69930 | Canola | plastid | 35.26 | 81.88 |
| Solyc02g021650.2.1 | Tomato | nucleus | 82.28 | 81.83 |
| CDY68484 | Canola | cytosol, endoplasmic reticulum, vacuole | 39.58 | 80.56 |
| AT4G21100.1 | Thale cress | nucleus | 80.26 | 80.33 |
| CDY69266 | Canola | nucleus | 40.4 | 80.29 |
| KRH59212 | Soybean | cytosol, nucleus | 39.03 | 79.74 |
| CDY57060 | Canola | cytosol, nucleus, plasma membrane | 78.79 | 77.79 |
| CDX76416 | Canola | cytosol | 78.33 | 75.62 |
| Bra020884.1-P | Field mustard | cytosol | 78.24 | 66.46 |
| CDY50606 | Canola | golgi, mitochondrion, plasma membrane | 13.5 | 46.52 |
| PGSC0003DMT400009595 | Potato | nucleus | 11.02 | 45.98 |
| CDY54326 | Canola | cytosol | 7.62 | 36.24 |
| EES04483 | Sorghum | mitochondrion | 22.04 | 19.48 |
| KXG34639 | Sorghum | plastid | 19.56 | 15.65 |
Protein Annotations
| MapMan:14.6.1.3.1 | MapMan:19.2.2.8.3.2 | Gene3D:2.130.10.10 | MapMan:26.1.1.3.2 | Gene3D:3.30.980.30 | UniProt:A0A1B6PAL8 |
| InterPro:Cleavage/polyA-sp_fac_asu_C | ncoils:Coil | InterPro:DDB1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003684 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR015943 | EnsemblPlants:KXG22678 | ProteinID:KXG22678 | ProteinID:KXG22678.1 |
| PFAM:PF03178 | PFAM:PF10433 | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF3 | EnsemblPlantsGene:SORBI_3009G255600 | SUPFAM:SSF50978 |
| UniParc:UPI0003C71C9F | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr9:+:58940398..58949169
Molecular Weight (calculated)
121545.0 Da
IEP (calculated)
4.988
GRAVY (calculated)
-0.111
Length
1089 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSVWNYVVTA HKPTSVSHSC VGNFTSPNQL NLIIAKCTRI EIHLLTPQGL QPMLDVPIYG RIATIELFRP HNETQDFLFI ATERYKFCVL QWDAEKSELI
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLH GCVKPTIVVL YQDNKDVRHV KTYEVALKDK
0201: DFVEGPWSQN NVDNGAGLLI PVPAPLGGVI IIGEEQIVYC NANSTFKAIP IKQSIIRAYG RVDPDGSRYL LGDNTGILHL LVLTHERERV TGLKIEYLGE
0301: TSIASSISYL DNGVVYVGSR FGDSQLVKLN LQADASGSFV EILERYVNLG PIVDFCVVDL DRQGQGQVVT CSGAFKDGSL RVVRNGIGIN EQASVELQGI
0401: KGLWSLKSSF NDPYDMYLVV SFISETRFLA MNMEDELEET EIEGFDAQTQ TLFCQNATND LLIQVTANSV RLVSCTSREL VDQWNAPAGF SVNVASANAS
0501: QVLLATGGGH LVYLEIRDSK LVEVKHAQLE HEISCLDLNP IGENPQYSSL AAVGMWTDIS VRIFSLPDLE LIRKENLGGE IVPRSVLLCT LEGVSYLLCA
0601: LGDGNLFSFL LNASTGELTD RKKVTLGTQP ISLRTFSSKG TTHVFASSDR PTVIYSSNKK LLYSNVNLKE VNHMCPFNTA AFPDSLAIAK EGELSIGTID
0701: DIQKLHIRTI PLNEQARRIC HQEQSKTLAF CSFKYNQSVE ESETHLIRLL DHQTFESLCV YPLDQYEFGC SIISCSFADD NNVYYCVGTA YVIPEENEPT
0801: KGRILVFAVE DGSLQLIVEK ETKGAVYSLN AFNGKLLAAI NQKIQLYKWM SREDGSHELQ SECGHHGHIL ALYTQTRGDF IVVGDLMKSI SLLVYKHEES
0901: AIEERARDYN ANWMTAVEML DDEVYVGAEN GYNLFTVRKN SDAATDDERA RLEVVGEYHL GEFVNRFRHG SLVMRLPDSE IGQIPTVIFG TINGVIGIIA
1001: SLPHDQYVFL EKLQSTLVKY IKGVGNLSHE QWRSFHNDKK TAEARNFLDG DLIESFLDLS RSKMEEVSKA MGVPVEELSK RVEELTRLH
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLH GCVKPTIVVL YQDNKDVRHV KTYEVALKDK
0201: DFVEGPWSQN NVDNGAGLLI PVPAPLGGVI IIGEEQIVYC NANSTFKAIP IKQSIIRAYG RVDPDGSRYL LGDNTGILHL LVLTHERERV TGLKIEYLGE
0301: TSIASSISYL DNGVVYVGSR FGDSQLVKLN LQADASGSFV EILERYVNLG PIVDFCVVDL DRQGQGQVVT CSGAFKDGSL RVVRNGIGIN EQASVELQGI
0401: KGLWSLKSSF NDPYDMYLVV SFISETRFLA MNMEDELEET EIEGFDAQTQ TLFCQNATND LLIQVTANSV RLVSCTSREL VDQWNAPAGF SVNVASANAS
0501: QVLLATGGGH LVYLEIRDSK LVEVKHAQLE HEISCLDLNP IGENPQYSSL AAVGMWTDIS VRIFSLPDLE LIRKENLGGE IVPRSVLLCT LEGVSYLLCA
0601: LGDGNLFSFL LNASTGELTD RKKVTLGTQP ISLRTFSSKG TTHVFASSDR PTVIYSSNKK LLYSNVNLKE VNHMCPFNTA AFPDSLAIAK EGELSIGTID
0701: DIQKLHIRTI PLNEQARRIC HQEQSKTLAF CSFKYNQSVE ESETHLIRLL DHQTFESLCV YPLDQYEFGC SIISCSFADD NNVYYCVGTA YVIPEENEPT
0801: KGRILVFAVE DGSLQLIVEK ETKGAVYSLN AFNGKLLAAI NQKIQLYKWM SREDGSHELQ SECGHHGHIL ALYTQTRGDF IVVGDLMKSI SLLVYKHEES
0901: AIEERARDYN ANWMTAVEML DDEVYVGAEN GYNLFTVRKN SDAATDDERA RLEVVGEYHL GEFVNRFRHG SLVMRLPDSE IGQIPTVIFG TINGVIGIIA
1001: SLPHDQYVFL EKLQSTLVKY IKGVGNLSHE QWRSFHNDKK TAEARNFLDG DLIESFLDLS RSKMEEVSKA MGVPVEELSK RVEELTRLH
0001: MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDPESSELI
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLF GCAKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: DFVEGPWSQN SLDNGADLLI PVPPPLCGVL IIGEETIVYC SASAFKAIPI RPSITKAYGR VDVDGSRYLL GDHAGMIHLL VITHEKEKVT GLKIELLGET
0301: SIASTISYLD NAVVFVGSSY GDSQLVKLNL HPDAKGSYVE VLERYINLGP IVDFCVVDLE RQGQGQVVTC SGAFKDGSLR VVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NLEDELEETE IEGFLSQVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR DEWHAPAGFT VNVATANASQ
0501: VLLATGGGHL VYLEIGDGKL TEVQHALLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFSLPELTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQM DTTTGQLKDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP TVIYSSNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP LGEHARRICH QEQTRTFGIC SLGNQSNSEE SEMHFVRLLD DQTFEFMSTY PLDSFEYGCS ILSCSFTEDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVED GRLQLIAEKE TKGAVYSLNA FNGKLLAAIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLLYKHEEGA
0901: IEERARDYNA NWMSAVEILD DDIYLGAENN FNLLTVKKNS EGATDEERGR LEVVGEYHLG EFVNRFRHGS LVMRLPDSEI GQIPTVIFGT VNGVIGVIAS
1001: LPQEQYTFLE KLQSSLRKVI KGVGGLSHEQ WRSFNNEKRT AEARNFLDGD LIESFLDLSR NKMEDISKSM NVQVEELCKR VEELTRLH
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLF GCAKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: DFVEGPWSQN SLDNGADLLI PVPPPLCGVL IIGEETIVYC SASAFKAIPI RPSITKAYGR VDVDGSRYLL GDHAGMIHLL VITHEKEKVT GLKIELLGET
0301: SIASTISYLD NAVVFVGSSY GDSQLVKLNL HPDAKGSYVE VLERYINLGP IVDFCVVDLE RQGQGQVVTC SGAFKDGSLR VVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NLEDELEETE IEGFLSQVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR DEWHAPAGFT VNVATANASQ
0501: VLLATGGGHL VYLEIGDGKL TEVQHALLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFSLPELTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQM DTTTGQLKDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP TVIYSSNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP LGEHARRICH QEQTRTFGIC SLGNQSNSEE SEMHFVRLLD DQTFEFMSTY PLDSFEYGCS ILSCSFTEDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVED GRLQLIAEKE TKGAVYSLNA FNGKLLAAIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLLYKHEEGA
0901: IEERARDYNA NWMSAVEILD DDIYLGAENN FNLLTVKKNS EGATDEERGR LEVVGEYHLG EFVNRFRHGS LVMRLPDSEI GQIPTVIFGT VNGVIGVIAS
1001: LPQEQYTFLE KLQSSLRKVI KGVGGLSHEQ WRSFNNEKRT AEARNFLDGD LIESFLDLSR NKMEDISKSM NVQVEELCKR VEELTRLH
Arabidopsis Description
DDB1ADDB1A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD4]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.