CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG22678

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80670.1	KXG22678	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044116_P001	Maize	cytosol, plastid	90.99	90.72
Os01t0635400-01	Rice	cytosol, plastid	88.37	88.37
TraesCS3B01G258300.1	Wheat	plastid	88.08	87.83
TraesCS3D01G224200.1	Wheat	plastid	87.5	87.25
TraesCS3A01G226200.1	Wheat	plastid	87.5	87.25
VIT_12s0055g00900.t01	Wine grape	cytosol, plastid	76.74	75.43
VIT_09s0002g09150.t01	Wine grape	cytosol, plastid	75.58	75.36
Bra008447.1-P	Field mustard	plastid	75.58	75.14
CDY53220	Canola	plastid	75.58	75.14
CDY66129	Canola	plastid	75.58	75.14
Bra003577.1-P	Field mustard	cytosol	60.17	75.0
AT1G80670.1	Thale cress	cytosol, plastid	75.87	74.79
HORVU3Hr1G056400.2	Barley	cytosol, plastid	86.34	74.44
CDX67958	Canola	cytosol, plastid	74.71	74.28
KXG24577	Sorghum	cytosol, plastid	77.33	74.09
CDY39955	Canola	plastid	74.71	73.85
CDX87331	Canola	plastid	74.71	73.85
Bra035162.1-P	Field mustard	plastid	74.71	73.85
Solyc10g047000.1.1	Tomato	nucleus	75.0	73.71
KRH71020	Soybean	cytosol, plastid	74.13	73.49
KRH75181	Soybean	nucleus	74.13	73.49
GSMUA_Achr6P30360_001	Banana	cytosol, plastid	77.33	71.89
GSMUA_Achr6P30400_001	Banana	cytosol, plastid	77.03	71.62
CDX79362	Canola	cytosol, plastid	69.77	71.43
AT1G15850.1	Thale cress	plastid	25.58	62.86
EER87819	Sorghum	cytosol	33.43	33.53
OQU90950	Sorghum	mitochondrion	20.93	22.29

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.10	EntrezGene:8058208	UniProt:C5XEI1	EnsemblPlants:EES01141	ProteinID:EES01141
ProteinID:EES01141.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000972	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005635	GO:GO:0005643	GO:GO:0006405	GO:GO:0006606	GO:GO:0006810	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0043130	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10971	PANTHER:PTHR10971:SF16
SMART:SM00320	EnsemblPlantsGene:SORBI_3003G231900	SUPFAM:SSF50978	UniParc:UPI0001A84462	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002456021.1	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:57125691..57137274

Molecular Weight (calculated)

37666.4 Da

IEP (calculated)

8.273

GRAVY (calculated)

-0.372

Length

344 amino acids

Sequence
(BLAST)

001: MATFGTAGAS AANQNPNKSV EVTPAPGDSV SSLSFSPKAN HLVSTSWDNQ VLCWEVMAGG ACQAKASISH DQPVLCSAWK DDGMTVFSGG CDKQVKMWPL
101: LSGGQPTVFS GHEAPIKELA WVPQMNLLVS GSWDKTLRYW DIRQPQPVHV QQLPDRCYAL SLSYPLMVVG TADRNVVVFN LQNPQAEFKR ITSPLKLQTR
201: CLAAFPDQQG FLIGSIEGRV GVHHVDDSQQ GKNFTFKCHR DGNDIYSVNS LNFHPVHGTF ATTGSDGGFN FWDKDSKQRL KAFNKCPAPI TCSTFNHDGS
301: IFAYAVCYDW SKGAEKHNPS AAKTNIFLHS VQESDVKGKP RGKK

Best Arabidopsis Sequence Match ( AT1G80670.1 )
(BLAST)

001: MATFGAPATA NSNPNKSYEV TPSPADSISS LSFSPRADIL VATSWDNQVR CWEISRSGAS LASAPKASIS HDQPVLCSAW KDDGTTVFSG GCDKQAKMWP
101: LLSGGQPVTV AMHEGPIAAM AWIPGMNLLA TGSWDKTLKY WDTRQQNPVH TQQLPDKCYT LSVKHPLMVV GTADRNLIVF NLQNPQTEFK RIQSPLKYQT
201: RCVTAFPDQQ GFLVGSIEGR VGVHHLDDSQ QSKNFTFKCH RDGNDIYSVN SLNFHPVHGT FATAGSDGAF NFWDKDSKQR LKAMSRCNQP IPCSSFNHDG
301: SIYAYAACYD WSKGAENHNP ATAKSSIFLH LPQESEVKAK PRVGATGRK

Arabidopsis Description

RAE1Protein RAE1 [Source:UniProtKB/Swiss-Prot;Acc:Q38942]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.