Factsheet for HORVU3Hr1G056400.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G094530.1
HORVU3Hr1G050820.11
HORVU7Hr1G056610.1
HORVU7Hr1G056620.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80670.1	HORVU1Hr1G094530.1	AT4G05420.1	18223036
AT1G80670.1	HORVU3Hr1G050820.11	AT4G05420.1	18223036
AT1G80670.1	HORVU7Hr1G056610.1	AT4G05420.1	18223036
AT1G80670.1	HORVU7Hr1G056620.1	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G224200.1	Wheat	plastid	83.21	96.23
TraesCS3B01G258300.1	Wheat	plastid	83.21	96.23
TraesCS3A01G226200.1	Wheat	plastid	82.96	95.94
Os01t0635400-01	Rice	cytosol, plastid	75.94	88.08
EES01141	Sorghum	plastid	74.44	86.34
Zm00001d044116_P001	Maize	cytosol, plastid	72.18	83.48
VIT_12s0055g00900.t01	Wine grape	cytosol, plastid	65.66	74.86
Solyc10g047000.1.1	Tomato	nucleus	65.41	74.57
VIT_09s0002g09150.t01	Wine grape	cytosol, plastid	64.41	74.49
Bra003577.1-P	Field mustard	cytosol	50.38	72.83
KRH75181	Soybean	nucleus	63.16	72.62
KRH71020	Soybean	cytosol, plastid	63.16	72.62
AT1G80670.1	Thale cress	cytosol, plastid	63.16	72.21
CDY66129	Canola	plastid	62.16	71.68
CDY53220	Canola	plastid	62.16	71.68
Bra008447.1-P	Field mustard	plastid	62.16	71.68
CDX67958	Canola	cytosol, plastid	61.9	71.39
GSMUA_Achr6P30400_001	Banana	cytosol, plastid	66.17	71.35
GSMUA_Achr6P30360_001	Banana	cytosol, plastid	65.91	71.08
CDX87331	Canola	plastid	61.65	70.69
Bra035162.1-P	Field mustard	plastid	61.65	70.69
CDY39955	Canola	plastid	61.4	70.4
CDX79362	Canola	cytosol, plastid	58.15	69.05
HORVU1Hr1G004960.1	Barley	plastid	68.67	66.99
AT1G15850.1	Thale cress	plastid	20.8	59.29
HORVU4Hr1G067810.1	Barley	plastid	29.82	29.75
HORVU5Hr1G096830.5	Barley	mitochondrion	20.3	25.16

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.10	UniProt:A0A287L548	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:HORVU3Hr1G056400	EnsemblPlants:HORVU3Hr1G056400.2	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10971	PANTHER:PTHR10971:SF16
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000B47457F	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:422485738..422492087

Molecular Weight (calculated)

43532.2 Da

IEP (calculated)

8.916

GRAVY (calculated)

-0.442

Length

399 amino acids

Sequence
(BLAST)

001: SPKRQPHATT CWFGTLGVHP TRFCPALKAK PSPQTANPAP SLPPPNSPNT FGIAMASFNA AGAAPANPNP NKSLEVNPAP GDSVSSLSFS PKANHLIATS
101: WDNQVRCWEV QPGGQCQAKA SISHDQPVLC SAWKDDGTTV FSGGCDKMVK MWPLLSGGQA TTFSGHEASV KELAWIPQMS LLVSGSWDKT LRYWDIRQPN
201: PAHVQQLPER CYALSLSYPL MAVGTADRNV VIFNLQNPQA EFKRIVSPLK FQTRCIAAFP DQQGFLVGSI EGRVGVHHVD DSNQSKNFTF KCHREGTDIY
301: SVNSLNFHPV HHTFATAGSD GGFNFWDKDS KQRLKAFSKC PSPVTCSTFN QDGSIFAYAV CYDWSKGAEK HNPSTAKTNI FLHSVQESDV KGKPRTGKK

Best Arabidopsis Sequence Match ( AT1G15850.1 )
(BLAST)

001: MSTSGDKATS STNNPNNSYE ITPPATDSIS SLSFSPKADI LVATSWDCQV RCWEITRSDG SIASEPKVSM SHDQPVLCSA WKDDGTTVFT GGCDKQAKMW
101: PLLSGAQPST VAMHDAPFNQ IAWIPGMNLL VTGSWDKTLK

Arabidopsis Description

F7H2.18 protein [Source:UniProtKB/TrEMBL;Acc:Q9LMQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.