Factsheet for VIT_12s0055g00900.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0003g04360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80670.1	VIT_10s0003g04360.t01	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g09150.t01	Wine grape	cytosol, plastid	91.43	92.75
KRH43922	Soybean	nucleus	88.86	89.63
KRH10504	Soybean	cytosol, plastid	88.57	89.34
Solyc10g047000.1.1	Tomato	nucleus	84.86	84.86
TraesCS1D01G034200.1	Wheat	plastid	82.29	83.97
TraesCS1B01G041300.1	Wheat	plastid	82.29	83.97
Os08t0176800-01	Rice	plastid	82.0	83.92
Bra003577.1-P	Field mustard	cytosol	66.0	83.7
TraesCS1A01G033000.1	Wheat	plastid	82.0	83.67
AT1G80670.1	Thale cress	cytosol, plastid	83.43	83.67
Bra008447.1-P	Field mustard	plastid	82.29	83.24
Bra035162.1-P	Field mustard	plastid	80.86	81.32
GSMUA_Achr6P30360_001	Banana	cytosol, plastid	82.57	78.11
GSMUA_Achr6P30400_001	Banana	cytosol, plastid	82.29	77.84
KXG24577	Sorghum	cytosol, plastid	79.71	77.72
Os01t0635400-01	Rice	cytosol, plastid	75.71	77.03
TraesCS3A01G226200.1	Wheat	plastid	75.71	76.81
TraesCS3B01G258300.1	Wheat	plastid	75.71	76.81
EES01141	Sorghum	plastid	75.43	76.74
TraesCS3D01G224200.1	Wheat	plastid	75.14	76.23
Zm00001d044116_P001	Maize	cytosol, plastid	74.57	75.65
AT1G15850.1	Thale cress	plastid	28.86	72.14
CDX79657	Canola	cytosol	10.0	71.43
HORVU1Hr1G004960.1	Barley	plastid	82.57	70.66
HORVU3Hr1G056400.2	Barley	cytosol, plastid	74.86	65.66
CDY72330	Canola	cytosol	17.43	61.0
VIT_03s0091g00710.t01	Wine grape	cytosol	33.14	34.42
VIT_01s0113g00430.t01	Wine grape	cytosol	23.14	24.77
VIT_00s0490g00010.t01	Wine grape	cytosol	0.29	5.26

Protein Annotations

EntrezGene:100250245	wikigene:100250245	Gene3D:2.130.10.10	MapMan:23.5.1.1.1.10	ProteinID:CBI20046	ProteinID:CBI20046.3
UniProt:D7STD2	EMBL:FN595228	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000972	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0006405	GO:GO:0006606	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0043130	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EntrezGene:LOC100250245	wikigene:LOC100250245	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR10971	PANTHER:PTHR10971:SF16	SMART:SM00320	SUPFAM:SSF50978	TIGR:TC61240
TIGR:TC63262	UniParc:UPI00015CBB3D	ArrayExpress:VIT_12s0055g00900	EnsemblPlantsGene:VIT_12s0055g00900	EnsemblPlants:VIT_12s0055g00900.t01	unigene:Vvi.11903
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002271645	RefSeq:XP_002271645.1
RefSeq:XP_010657599.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:-:14269614..14294674

Molecular Weight (calculated)

38860.9 Da

IEP (calculated)

8.485

GRAVY (calculated)

-0.466

Length

350 amino acids

Sequence
(BLAST)

001: MSNFSSITTA SNPNPNKSIE VAQPPSDSVS SLSFSPKANI LVATSWDNQV RCWEIMRNGP TVGSVPKASI SHDQPVLCSA WKDDGTTVFS GGCDKQVKMW
101: PLLSGGQPMT VAMHDAPIKE VAWIPEMNLL ATGSWDKTLK YWDTRQPNPV HTQQLPDRCY ALTVRHPLMV VGTADRNLIV FNLQNPQTEF KRITSPLKYQ
201: TRCVAAFPDQ QGFLVGSIEG RVGVHHLDDA QQSKNFTFKC HREGNEIYSV NSLNFHPVHH TFATAGSDGA FNFWDKDSKQ RLKAMSRCSQ PIPCSTFNND
301: GSIFAYSVCY DWSKGAENHN PATAKSYIFL HLPQEAEVKG KPRIGTSGRK

Best Arabidopsis Sequence Match ( AT1G80670.1 )
(BLAST)

001: MATFGAPATA NSNPNKSYEV TPSPADSISS LSFSPRADIL VATSWDNQVR CWEISRSGAS LASAPKASIS HDQPVLCSAW KDDGTTVFSG GCDKQAKMWP
101: LLSGGQPVTV AMHEGPIAAM AWIPGMNLLA TGSWDKTLKY WDTRQQNPVH TQQLPDKCYT LSVKHPLMVV GTADRNLIVF NLQNPQTEFK RIQSPLKYQT
201: RCVTAFPDQQ GFLVGSIEGR VGVHHLDDSQ QSKNFTFKCH RDGNDIYSVN SLNFHPVHGT FATAGSDGAF NFWDKDSKQR LKAMSRCNQP IPCSSFNHDG
301: SIYAYAACYD WSKGAENHNP ATAKSSIFLH LPQESEVKAK PRVGATGRK

Arabidopsis Description

RAE1Protein RAE1 [Source:UniProtKB/Swiss-Prot;Acc:Q38942]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.