Factsheet for Os01t0635400-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G258300.1	Wheat	plastid	90.41	90.14
TraesCS3D01G224200.1	Wheat	plastid	89.83	89.57
TraesCS3A01G226200.1	Wheat	plastid	89.83	89.57
EES01141	Sorghum	plastid	88.37	88.37
Zm00001d044116_P001	Maize	cytosol, plastid	86.63	86.38
Os08t0176800-01	Rice	plastid	80.23	80.7
VIT_09s0002g09150.t01	Wine grape	cytosol, plastid	76.16	75.94
HORVU3Hr1G056400.2	Barley	cytosol, plastid	88.08	75.94
VIT_12s0055g00900.t01	Wine grape	cytosol, plastid	77.03	75.71
Bra008447.1-P	Field mustard	plastid	75.87	75.43
CDY53220	Canola	plastid	75.87	75.43
CDY66129	Canola	plastid	75.87	75.43
Bra003577.1-P	Field mustard	cytosol	60.47	75.36
KRH71020	Soybean	cytosol, plastid	75.58	74.93
KRH75181	Soybean	nucleus	75.58	74.93
CDX67958	Canola	cytosol, plastid	75.29	74.86
Solyc10g047000.1.1	Tomato	nucleus	75.58	74.29
AT1G80670.1	Thale cress	cytosol, plastid	75.29	74.21
CDX87331	Canola	plastid	74.71	73.85
Bra035162.1-P	Field mustard	plastid	74.71	73.85
CDY39955	Canola	plastid	74.42	73.56
GSMUA_Achr6P30400_001	Banana	cytosol, plastid	77.62	72.16
GSMUA_Achr6P30360_001	Banana	cytosol, plastid	77.33	71.89
CDX79362	Canola	cytosol, plastid	70.06	71.73
AT1G15850.1	Thale cress	plastid	25.87	63.57
Os03t0448600-01	Rice	cytosol	33.72	33.82
Os07t0588500-00	Rice	cytosol	33.43	31.59
Os03t0758700-01	Rice	endoplasmic reticulum, plasma membrane	18.9	22.11
Os07t0588600-01	Rice	nucleus	13.66	21.36
Os07t0588700-00	Rice	cytosol	9.88	15.04

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.10	EntrezGene:4326570	ProteinID:BAB90741.1	ProteinID:BAD69442.1	ProteinID:BAF05577.1
ProteinID:BAS73329.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000972	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005635	GO:GO:0005643	GO:GO:0006405	GO:GO:0006606	GO:GO:0006810	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0043130	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EnsemblPlantsGene:Os01g0635400	EnsemblPlants:Os01t0635400-01	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR10971	PANTHER:PTHR10971:SF16	UniProt:Q8RYM1	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00000A2ADB
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015622495.1	SEG:seg

Description

OsWD40-20Similar to mRNA-associated protein mrnp 41 (Rae1 protein homolog). (Os01t0635400-01);Similar to rae1-like protein. (Os01t0635400-02)

Coordinates

chr1:+:25466388..25474144

Molecular Weight (calculated)

37850.7 Da

IEP (calculated)

8.418

GRAVY (calculated)

-0.449

Length

344 amino acids

Sequence
(BLAST)

001: MASFTAGGGG ANNNPNKSLE VNPAPGDSVS SLSFSPKANH LVATSWDNQV RCWEIQPGGQ CQAKASISHD QPVLCSAWKD DGTTVFSGGC DKQIKMWPLL
101: SGGQPMVLSG HEAPVKELAW IPQMNLLVSG SWDKTLRYWD VRQPQPAHVQ QLPERCYALS LSYPLMVVGT ADRNVIVFNM QNPQAEFKRI VSPLKLQTRC
201: LAAFPDQQGF LVGSIEGRVG VHHVDDGQQG KNFTFKCHRD GNDIYAVNAL NFHPVHHTFA TSGSDGGFNF WDKDSKQRLK AFNKCPSPIT CSTFNQDGSI
301: FAYAVCYDWS KGAEKHNPST AKTNIFLHSV QESEVKGKPR VNKK

Best Arabidopsis Sequence Match ( AT1G80670.1 )
(BLAST)

001: MATFGAPATA NSNPNKSYEV TPSPADSISS LSFSPRADIL VATSWDNQVR CWEISRSGAS LASAPKASIS HDQPVLCSAW KDDGTTVFSG GCDKQAKMWP
101: LLSGGQPVTV AMHEGPIAAM AWIPGMNLLA TGSWDKTLKY WDTRQQNPVH TQQLPDKCYT LSVKHPLMVV GTADRNLIVF NLQNPQTEFK RIQSPLKYQT
201: RCVTAFPDQQ GFLVGSIEGR VGVHHLDDSQ QSKNFTFKCH RDGNDIYSVN SLNFHPVHGT FATAGSDGAF NFWDKDSKQR LKAMSRCNQP IPCSSFNHDG
301: SIYAYAACYD WSKGAENHNP ATAKSSIFLH LPQESEVKAK PRVGATGRK

Arabidopsis Description

RAE1Protein RAE1 [Source:UniProtKB/Swiss-Prot;Acc:Q38942]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.