CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY68484
CDY69266
CDY69930
CDY70585

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80670.1	CDY68484	AT4G05420.1	18223036
AT1G80670.1	CDY69266	AT4G05420.1	18223036
AT1G80670.1	CDY69930	AT4G05420.1	18223036
AT1G80670.1	CDY70585	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87331	Canola	plastid	98.56	98.56
CDY66129	Canola	plastid	95.4	95.95
CDY53220	Canola	plastid	95.4	95.95
CDX67958	Canola	cytosol, plastid	92.24	92.77
AT1G80670.1	Thale cress	cytosol, plastid	91.95	91.69
CDX79362	Canola	cytosol, plastid	86.78	89.88
KRH71020	Soybean	cytosol, plastid	81.9	82.13
KRH75181	Soybean	nucleus	81.32	81.56
Os08t0176800-01	Rice	plastid	77.87	79.24
TraesCS1D01G034200.1	Wheat	plastid	77.01	78.13
TraesCS1B01G041300.1	Wheat	plastid	76.72	77.84
TraesCS1A01G033000.1	Wheat	plastid	76.72	77.84
Solyc10g047000.1.1	Tomato	nucleus	76.72	76.29
CDX79657	Canola	cytosol	10.63	75.51
EES01141	Sorghum	plastid	73.85	74.71
Os01t0635400-01	Rice	cytosol, plastid	73.56	74.42
Zm00001d044116_P001	Maize	cytosol, plastid	72.13	72.75
GSMUA_Achr6P30360_001	Banana	cytosol, plastid	77.3	72.7
GSMUA_Achr6P30400_001	Banana	cytosol, plastid	77.01	72.43
TraesCS3B01G258300.1	Wheat	plastid	71.55	72.17
TraesCS3A01G226200.1	Wheat	plastid	71.26	71.88
KXG24577	Sorghum	cytosol, plastid	74.14	71.87
TraesCS3D01G224200.1	Wheat	plastid	70.98	71.59
CDY72330	Canola	cytosol	18.97	66.0
HORVU1Hr1G004960.1	Barley	plastid	76.44	65.04
HORVU3Hr1G056400.2	Barley	cytosol, plastid	70.4	61.4
CDY42193	Canola	cytosol, plastid	35.06	35.88
CDX95434	Canola	cytosol, plastid	35.06	35.88
CDY03579	Canola	cytosol, plastid	33.91	34.71
CDY59371	Canola	cytosol, plastid	33.62	34.51
CDY44065	Canola	cytosol	21.84	24.13
CDY28548	Canola	cytosol	21.55	23.81

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.10	UniProt:A0A078HN52	EnsemblPlants:CDY39955	ProteinID:CDY39955	ProteinID:CDY39955.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00068837001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR10971	PANTHER:PTHR10971:SF16	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EDC82B	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

BnaC06g40330DBnaC06g40330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HN52]

Coordinates

chrLK032461:+:77443..80038

Molecular Weight (calculated)

38256.9 Da

IEP (calculated)

8.329

GRAVY (calculated)

-0.429

Length

348 amino acids

Sequence
(BLAST)

001: MATFGAAANA NTNPNKSYEV TPSPADSISS LSFSPRADIL VATSWDNQVR CWEISRSGTS LASAPKASIS HDQPVLCSAW KDDGSTVFSG GCDKQAKMWP
101: VLSGGQPVTV AMHDAPIVDM AWIPGMNLLV TGSWDKTLKY WDTRQQAPVH TQQLPDKCYS LSVKHPLLVV GTADRNLIVF NLQNPQTEFK RIVSPLKYQT
201: RCVTAFPDQQ GFLVGSIEGR VGVHHLDDSQ QNKNFTFKCH RDGNEIYSVN ALNFHPVHGT FATAGSDGAF NFWDKDSKQR LKAMSRCSQP IPCSSFNHDG
301: SIYAYASCYD WNKGAENHNP ATAKSSIFLH MPQESEVKAK PRVASGRK

Best Arabidopsis Sequence Match ( AT1G80670.1 )
(BLAST)

001: MATFGAPATA NSNPNKSYEV TPSPADSISS LSFSPRADIL VATSWDNQVR CWEISRSGAS LASAPKASIS HDQPVLCSAW KDDGTTVFSG GCDKQAKMWP
101: LLSGGQPVTV AMHEGPIAAM AWIPGMNLLA TGSWDKTLKY WDTRQQNPVH TQQLPDKCYT LSVKHPLMVV GTADRNLIVF NLQNPQTEFK RIQSPLKYQT
201: RCVTAFPDQQ GFLVGSIEGR VGVHHLDDSQ QSKNFTFKCH RDGNDIYSVN SLNFHPVHGT FATAGSDGAF NFWDKDSKQR LKAMSRCNQP IPCSSFNHDG
301: SIYAYAACYD WSKGAENHNP ATAKSSIFLH LPQESEVKAK PRVGATGRK

Arabidopsis Description

RAE1Protein RAE1 [Source:UniProtKB/Swiss-Prot;Acc:Q38942]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.