CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59371	Canola	cytosol, plastid	97.65	97.94
AT1G49910.1	Thale cress	cytosol	92.35	92.63
CDX95434	Canola	cytosol, plastid	86.18	86.18
CDY42193	Canola	cytosol, plastid	86.18	86.18
VIT_03s0091g00710.t01	Wine grape	cytosol	81.76	82.49
Solyc01g107160.2.1	Tomato	nucleus	82.06	82.06
PGSC0003DMT400066160	Potato	extracellular	81.76	81.76
Os03t0448600-01	Rice	cytosol	80.29	79.59
EER87819	Sorghum	cytosol	79.71	79.01
TraesCS4D01G245500.2	Wheat	cytosol, plastid	80.0	78.84
TraesCS4A01G058600.1	Wheat	cytosol, plastid	80.0	78.84
TraesCS4B01G246100.1	Wheat	cytosol	65.88	72.96
KRH35672	Soybean	cytosol	27.35	70.99
HORVU4Hr1G067810.1	Barley	plastid	79.71	67.75
Os07t0588500-00	Rice	cytosol	65.88	61.54
TraesCS2D01G193800.1	Wheat	cytosol	61.47	61.11
TraesCS2A01G194000.1	Wheat	cytosol	62.06	60.98
TraesCS2B01G212800.1	Wheat	cytosol	61.76	60.52
CDX79657	Canola	cytosol	5.29	36.73
GSMUA_Achr4P03390_001	Banana	extracellular	45.29	36.41
CDY44065	Canola	cytosol	33.24	35.87
CDY28548	Canola	cytosol	32.94	35.56
CDY39955	Canola	plastid	34.71	33.91
CDX67958	Canola	cytosol, plastid	34.41	33.81
CDX79362	Canola	cytosol, plastid	33.24	33.63
CDX87331	Canola	plastid	34.41	33.62
CDY72330	Canola	cytosol	9.71	33.0
CDY66129	Canola	plastid	33.53	32.95
CDY53220	Canola	plastid	33.53	32.95

Protein Annotations

MapMan:13.3.5.5.2	Gene3D:2.130.10.10	EnsemblPlants:CDY03579	ProteinID:CDY03579	ProteinID:CDY03579.1	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00116320001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10971
PANTHER:PTHR10971:SF24	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EC2D0A	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaC03g68380D

Coordinates

chrLK031944:+:576398..578747

Molecular Weight (calculated)

37758.2 Da

IEP (calculated)

7.495

GRAVY (calculated)

-0.520

Length

340 amino acids

Sequence
(BLAST)

001: MTLLPSVGRE LSNPPSDGIS NLRFSNSSDH LLVSSWDKSV RLYDANADSM RGEFKHGGGA VLDCCFHDES SGFSACADHK VRRIDFNAGK EDILGMHDEP
101: VRCVEYSYAA GQVITGSWDR TIKCWDPRAA SGPERSQIGT YKQPERVNSL SLVGNHLVVA TAGRHVNIYD LRNMAQPEQR RESSLKYQTR CVRCYPNGTG
201: YALSSVEGRV SMEFFDLSEA AQAKKYAFKC HRKSEDGRDI VYPVNAIAFH PIYGTFATGG CDGFVNVWDG NNKKRLYQYS KYPTSIAALS FSRDGGLLAI
301: ASSYTFEEGD KPHEPDAIFV RNVNEIEVKP KPKVYPNPPA

Best Arabidopsis Sequence Match ( AT1G49910.1 )
(BLAST)

001: MTLVPAIGRE LSNPPSDGIS NLRFSNNSDH LLVSSWDKSV RLYDANGDLM RGEFKHGGAV LDCCFHDDSS GFSVCADTKV RRIDFNAGKE DVLGTHEKPV
101: RCVEYSYAAG QVITGSWDKT IKCWDPRGAS GTERTQIGTY MQPERVNSLS LVGNRLVVAT AGRHVNIYDL RNMSQPEQRR ESSLKYQTRC VRCYPNGTGY
201: ALSSVEGRVS MEFFDLSEAA QAKKYAFKCH RKSEDGRDIV YPVNAIAFHP IYGTFASGGC DGFVNIWDGN NKKRLYQYSK YPTSIAALSF SRDGGLLAVA
301: SSYTFEEGDK PHEPDAIFVR SVNEIEVKPK PKVYPNPPV

Arabidopsis Description

BUB3.2BUB3.2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7L6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.