CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72330	Canola	cytosol	69.39	34.0
CDX79362	Canola	cytosol, plastid	73.47	10.71
CDY53220	Canola	plastid	75.51	10.69
CDY66129	Canola	plastid	75.51	10.69
CDX87331	Canola	plastid	75.51	10.63
CDY39955	Canola	plastid	75.51	10.63
CDX67958	Canola	cytosol, plastid	73.47	10.4
VIT_09s0002g09150.t01	Wine grape	cytosol, plastid	71.43	10.14
KRH43922	Soybean	nucleus	71.43	10.09
KRH10504	Soybean	cytosol, plastid	71.43	10.09
VIT_12s0055g00900.t01	Wine grape	cytosol, plastid	71.43	10.0
CDY59371	Canola	cytosol, plastid	36.73	5.31
CDY42193	Canola	cytosol, plastid	36.73	5.29
CDY03579	Canola	cytosol, plastid	36.73	5.29
CDX95434	Canola	cytosol, plastid	36.73	5.29
CDY28548	Canola	cytosol	26.53	4.13
CDY44065	Canola	cytosol	24.49	3.81

Protein Annotations

EnsemblPlants:CDX79657	EnsemblPlantsGene:GSBRNA2T00132451001	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	PANTHER:PTHR10971	PANTHER:PTHR10971:SF16	ProteinID:CDX79657	ProteinID:CDX79657.1
UniParc:UPI0004EE40B1	MapMan:35.2	:	:	:	:

Description

BnaC03g19930D

Coordinates

chrLK031818:+:1427937..1428647

Molecular Weight (calculated)

5518.6 Da

IEP (calculated)

8.787

GRAVY (calculated)

-0.320

Length

49 amino acids

Sequence
(BLAST)

1: MDQLNKPNEF KRIVSPLKYQ TRCVTAFPDQ QGFLVGSIEV RVGWCSSSG

Best Arabidopsis Sequence Match ( AT1G80670.1 )
(BLAST)

001: MATFGAPATA NSNPNKSYEV TPSPADSISS LSFSPRADIL VATSWDNQVR CWEISRSGAS LASAPKASIS HDQPVLCSAW KDDGTTVFSG GCDKQAKMWP
101: LLSGGQPVTV AMHEGPIAAM AWIPGMNLLA TGSWDKTLKY WDTRQQNPVH TQQLPDKCYT LSVKHPLMVV GTADRNLIVF NLQNPQTEFK RIQSPLKYQT
201: RCVTAFPDQQ GFLVGSIEGR VGVHHLDDSQ QSKNFTFKCH RDGNDIYSVN SLNFHPVHGT FATAGSDGAF NFWDKDSKQR LKAMSRCNQP IPCSSFNHDG
301: SIYAYAACYD WSKGAENHNP ATAKSSIFLH LPQESEVKAK PRVGATGRK

Arabidopsis Description

RAE1Protein RAE1 [Source:UniProtKB/Swiss-Prot;Acc:Q38942]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.