CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43922	Soybean	nucleus	97.98	97.98
VIT_12s0055g00900.t01	Wine grape	cytosol, plastid	89.34	88.57
VIT_09s0002g09150.t01	Wine grape	cytosol, plastid	86.46	86.96
KRH71020	Soybean	cytosol, plastid	86.17	86.17
KRH75181	Soybean	nucleus	85.59	85.59
CDX79657	Canola	cytosol	10.09	71.43
CDY72330	Canola	cytosol	17.87	62.0
KRH35682	Soybean	nucleus	32.28	32.94
KRG91092	Soybean	nucleus	31.99	32.65
KRG91104	Soybean	nucleus	31.99	32.27
KRH35672	Soybean	cytosol	11.24	29.77
KRH70829	Soybean	cytosol	22.77	23.94
KRH74957	Soybean	cytosol	21.9	23.03

Protein Annotations

EntrezGene:100803005	Gene3D:2.130.10.10	MapMan:23.5.1.1.1.10	EMBL:ACUP02009146	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_15G051700
GO:GO:0000972	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643
GO:GO:0006405	GO:GO:0006606	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0043130	UniProt:I1MDV2	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH10504
ProteinID:KRH10504	ProteinID:KRH10504.1	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR10971	PANTHER:PTHR10971:SF16	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0001CAAED7	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:4075068..4080380

Molecular Weight (calculated)

38854.9 Da

IEP (calculated)

8.483

GRAVY (calculated)

-0.470

Length

347 amino acids

Sequence
(BLAST)

001: MSNFLSNTNP NPNKSFEVNQ PPTDSVSSLS FSPKANFLVA TSWDNQVRCW EVARNGVNVA TVPKASITHD HPVLCSTWKD DGTTVFSGGC DKQVKMWPLL
101: SGGQPMTVAM HDAPIKELAW IPEMNLLVTG SWDKTMKYWD TRQSNPVHTQ QLPERCYAMT VRHPLMVVGT ADRNLIVYNL QNPQVEFKRI VSPLKYQTRC
201: LAAFPDQQGF LVGSIEGRVG VHHLDDSQHG KNFTFKCHRE GNEIYSVNSL NFHPVHHTFA TSGSDGAFNF WDKDSKQRLK AMLRCSQPIP CSTFNNDGSI
301: FAYSVCYDWS KGAENSNPAA AKTYIFLHLP QESEVKGKPR IGATGRK

Best Arabidopsis Sequence Match ( AT1G80670.1 )
(BLAST)

001: MATFGAPATA NSNPNKSYEV TPSPADSISS LSFSPRADIL VATSWDNQVR CWEISRSGAS LASAPKASIS HDQPVLCSAW KDDGTTVFSG GCDKQAKMWP
101: LLSGGQPVTV AMHEGPIAAM AWIPGMNLLA TGSWDKTLKY WDTRQQNPVH TQQLPDKCYT LSVKHPLMVV GTADRNLIVF NLQNPQTEFK RIQSPLKYQT
201: RCVTAFPDQQ GFLVGSIEGR VGVHHLDDSQ QSKNFTFKCH RDGNDIYSVN SLNFHPVHGT FATAGSDGAF NFWDKDSKQR LKAMSRCNQP IPCSSFNHDG
301: SIYAYAACYD WSKGAENHNP ATAKSSIFLH LPQESEVKAK PRVGATGRK

Arabidopsis Description

RAE1Protein RAE1 [Source:UniProtKB/Swiss-Prot;Acc:Q38942]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.