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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • plastid 3
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG91092 Soybean nucleus 98.53 98.53
KRG91104 Soybean nucleus 97.35 96.22
VIT_03s0091g00710.t01 Wine grape cytosol 88.53 89.32
Solyc01g107160.2.1 Tomato nucleus 87.65 87.65
PGSC0003DMT400066160 Potato extracellular 87.35 87.35
Os03t0448600-01 Rice cytosol 83.24 82.51
EER87819 Sorghum cytosol 82.65 81.92
TraesCS4A01G058600.1 Wheat cytosol, plastid 82.06 80.87
TraesCS4D01G245500.2 Wheat cytosol, plastid 81.76 80.58
TraesCS4B01G246100.1 Wheat cytosol 68.24 75.57
HORVU4Hr1G067810.1 Barley plastid 81.76 69.5
KRH35672 Soybean cytosol 26.76 69.47
Os07t0588500-00 Rice cytosol 69.12 64.56
TraesCS2A01G194000.1 Wheat cytosol 62.94 61.85
TraesCS2D01G193800.1 Wheat cytosol 62.06 61.7
TraesCS2B01G212800.1 Wheat cytosol 62.35 61.1
KRH74957 Soybean cytosol 35.59 36.67
KRH70829 Soybean cytosol 35.59 36.67
GSMUA_Achr4P03390_001 Banana extracellular 45.29 36.41
KRH43922 Soybean nucleus 32.94 32.28
KRH10504 Soybean cytosol, plastid 32.94 32.28
KRH71020 Soybean cytosol, plastid 32.35 31.7
KRH75181 Soybean nucleus 32.06 31.41
Protein Annotations
EntrezGene:100808389MapMan:13.3.5.5.2Gene3D:2.130.10.10EMBL:ACUP02006698InterPro:G-protein_beta_WD-40_repEnsemblPlantsGene:GLYMA_10G258300
GO:GO:0000776GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0007049GO:GO:0007094GO:GO:0008150
GO:GO:0009524GO:GO:0009987GO:GO:0016043GO:GO:0033597GO:GO:0043130GO:GO:1990298
UniProt:I1LEF5InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986EnsemblPlants:KRH35682ProteinID:KRH35682
ProteinID:KRH35682.1PFAM:PF00400PRINTS:PR00320PFscan:PS50082PFscan:PS50294PANTHER:PTHR10971
PANTHER:PTHR10971:SF24SMART:SM00320SUPFAM:SSF50978UniParc:UPI000233CC72InterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeat
InterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfSEG:seg:::
Description
hypothetical protein
Coordinates
chr10:+:48457962..48461623
Molecular Weight (calculated)
37764.3 Da
IEP (calculated)
8.519
GRAVY (calculated)
-0.459
Length
340 amino acids
Sequence
(BLAST)
001: MASAVPATGR ELSNPPSDGI TNLRFSNHSD HLLVSSWDKS VRLYDASANV LRGEFMHAGP VLDCCFHDDS SGFSVAADNT VRRLVFSSNK EDILGRHDAP
101: VRCVEYSYAA GQLITGSWDK TLKCWDPRGA SGQERTLVGT YPQPERVYSL SLVGHRLVVA TAGRHVNIYD LRNMSQPEQR RESSLKYQTR CVRCYPNGTG
201: YALSSVEGRV AMEFFDLSEA SQAKKYAFKC HRKSEAGRDI VYPVNAIAFH PIYGTFATGG CDGYVNVWDG NNKKRLYQYS KYPTSVAALS FSRDGRLLAV
301: ASSYTFEEGP KSQEQDAIFV RSVNEIEVKP KPKVYPNPPA
Best Arabidopsis Sequence Match ( AT3G19590.1 )
(BLAST)
001: MTTVTPSAGR ELSNPPSDGI SNLRFSNNSD HLLVSSWDKR VRLYDVSTNS LKGEFLHGGA VLDCCFHDDF SGFSVGADYK VRRIVFNVGK EDILGTHDKA
101: VRCVEYSYAA GQVITGSWDK TVKCWDPRGA SGPERTQVGT YLQPERVYSM SLVGHRLVVA TAGRHVNIYD LRNMSQPEQR RESSLKYQTR CVRCYPNGTG
201: YALSSVEGRV AMEFFDLSEA AQAKKYAFKC HRKSEAGRDI VYPVNSIAFH PIYGTFATGG CDGFVNIWDG NNKKRLYQYS KYPTSISALS FSRDGQLLAV
301: ASSYTFEEGE KSQEPEAIFV RSVNEIEVKP KPKVYPNPAA
Arabidopsis Description
BUB3.1BUB3.1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA46]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.