Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G193800.1 | Wheat | cytosol | 94.51 | 95.61 |
| TraesCS2B01G212800.1 | Wheat | cytosol | 94.51 | 94.24 |
| VIT_03s0091g00710.t01 | Wine grape | cytosol | 63.01 | 64.69 |
| Solyc01g107160.2.1 | Tomato | nucleus | 63.29 | 64.41 |
| PGSC0003DMT400066160 | Potato | extracellular | 63.01 | 64.12 |
| Os07t0588500-00 | Rice | cytosol | 67.34 | 64.01 |
| Bra014226.1-P | Field mustard | cytosol, plastid | 62.43 | 63.72 |
| CDY59371 | Canola | cytosol, plastid | 62.43 | 63.72 |
| Bra038220.1-P | Field mustard | cytosol, plastid | 62.14 | 63.24 |
| CDX95434 | Canola | cytosol, plastid | 62.14 | 63.24 |
| CDY42193 | Canola | cytosol, plastid | 62.14 | 63.24 |
| TraesCS4A01G058600.1 | Wheat | cytosol, plastid | 63.01 | 63.19 |
| AT3G19590.1 | Thale cress | cytosol | 61.85 | 62.94 |
| KRH35682 | Soybean | nucleus | 61.85 | 62.94 |
| KRG91092 | Soybean | nucleus | 61.56 | 62.65 |
| AT1G49910.1 | Thale cress | cytosol | 60.98 | 62.24 |
| KRG91104 | Soybean | nucleus | 61.85 | 62.21 |
| CDY03579 | Canola | cytosol, plastid | 60.98 | 62.06 |
| KRH35672 | Soybean | cytosol | 19.08 | 50.38 |
| TraesCS3A01G226200.1 | Wheat | plastid | 32.08 | 32.17 |
| TraesCS5A01G396600.1 | Wheat | mitochondrion | 29.48 | 31.68 |
| TraesCS1A01G033000.1 | Wheat | plastid | 31.21 | 31.49 |
| GSMUA_Achr4P03390_001 | Banana | extracellular | 36.13 | 29.55 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G194000.1 | EnsemblPlantsGene:TraesCS2A01G194000 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | PANTHER:PTHR10971 | PANTHER:PTHR10971:SF24 | PFAM:PF00400 | PFscan:PS50082 | PFscan:PS50294 |
| SEG:seg | SMART:SM00320 | SUPFAM:SSF50978 | MapMan:13.3.5.5.2 | : | : |
Description
No Description!
Coordinates
chr2A:-:162269874..162274443
Molecular Weight (calculated)
38150.8 Da
IEP (calculated)
8.612
GRAVY (calculated)
-0.458
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAPATGQPP VDAGGGRIGL GRELGHPPRD GVSSLRFSKH SNRLLVSSWE KAVRLLDVDA TNALVGAFAH KTPVLDCCFH DNDSSAFSAS SDHVVRRLSF
101: SAKSSYRLGT HDGPVRCVEY SYTTGQVITG SWDRTIKCWD QRGATGPEYT LIGTHTQPER VYALSLAGHK LVVATAGEHV NVYDLRNMSE PQQRKSYLNS
201: QTRCVECYPN KTGFALGSTD GRVAMDFFDQ SESSLEKRYG FKCHRLTEGR VRVAYPVNAI AFHSVHGTFA TGGCDGFVCT WDGENKKRLF QSPRYPTSIA
301: ALSFSKDNNL LAVASSYTYE RGKIENEPGT KIFIRDVNEV EVKPRH
101: SAKSSYRLGT HDGPVRCVEY SYTTGQVITG SWDRTIKCWD QRGATGPEYT LIGTHTQPER VYALSLAGHK LVVATAGEHV NVYDLRNMSE PQQRKSYLNS
201: QTRCVECYPN KTGFALGSTD GRVAMDFFDQ SESSLEKRYG FKCHRLTEGR VRVAYPVNAI AFHSVHGTFA TGGCDGFVCT WDGENKKRLF QSPRYPTSIA
301: ALSFSKDNNL LAVASSYTYE RGKIENEPGT KIFIRDVNEV EVKPRH
001: MTTVTPSAGR ELSNPPSDGI SNLRFSNNSD HLLVSSWDKR VRLYDVSTNS LKGEFLHGGA VLDCCFHDDF SGFSVGADYK VRRIVFNVGK EDILGTHDKA
101: VRCVEYSYAA GQVITGSWDK TVKCWDPRGA SGPERTQVGT YLQPERVYSM SLVGHRLVVA TAGRHVNIYD LRNMSQPEQR RESSLKYQTR CVRCYPNGTG
201: YALSSVEGRV AMEFFDLSEA AQAKKYAFKC HRKSEAGRDI VYPVNSIAFH PIYGTFATGG CDGFVNIWDG NNKKRLYQYS KYPTSISALS FSRDGQLLAV
301: ASSYTFEEGE KSQEPEAIFV RSVNEIEVKP KPKVYPNPAA
101: VRCVEYSYAA GQVITGSWDK TVKCWDPRGA SGPERTQVGT YLQPERVYSM SLVGHRLVVA TAGRHVNIYD LRNMSQPEQR RESSLKYQTR CVRCYPNGTG
201: YALSSVEGRV AMEFFDLSEA AQAKKYAFKC HRKSEAGRDI VYPVNSIAFH PIYGTFATGG CDGFVNIWDG NNKKRLYQYS KYPTSISALS FSRDGQLLAV
301: ASSYTFEEGE KSQEPEAIFV RSVNEIEVKP KPKVYPNPAA
Arabidopsis Description
BUB3.1BUB3.1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA46]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.