Factsheet for TraesCS4D01G000900.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G076800.1
TraesCS4B01G232900.1
TraesCS4D01G234100.1
TraesCS5A01G298000.1
TraesCS5B01G297000.2
TraesCS5D01G304800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38600.1	TraesCS4A01G076800.1	AT2G32840.1	21798944
AT5G38600.1	TraesCS4B01G232900.1	AT2G32840.1	21798944
AT5G38600.1	TraesCS4D01G234100.1	AT2G32840.1	21798944
AT5G38600.1	TraesCS5A01G298000.1	AT2G43370.1	21798944
AT5G38600.1	TraesCS5B01G297000.2	AT2G43370.1	21798944
AT5G38600.1	TraesCS5D01G304800.1	AT2G43370.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G000900.1	Wheat	nucleus	73.66	72.77
TraesCS4B01G002400.2	Wheat	nucleus	67.59	69.89
HORVU4Hr1G000670.1	Barley	nucleus	68.63	68.04
Os06t0495700-00	Rice	nucleus	49.74	59.05
EES05262	Sorghum	nucleus	52.69	58.57
Zm00001d050793_P001	Maize	nucleus	52.69	55.99
GSMUA_Achr5P23660_001	Banana	nucleus	36.74	45.3
AT1G67210.1	Thale cress	nucleus	29.81	42.47
CDY12628	Canola	nucleus	29.98	39.68
Bra034014.1-P	Field mustard	nucleus	29.64	38.86
CDY46038	Canola	nucleus	29.64	38.69
AT5G38600.1	Thale cress	nucleus	32.58	35.34
Solyc03g045060.2.1	Tomato	nucleus	32.06	34.91
CDX67412	Canola	nucleus	28.94	34.5
VIT_01s0011g02770.t01	Wine grape	nucleus	23.22	34.27
Bra028416.1-P	Field mustard	nucleus	25.48	34.27
KRH18266	Soybean	nucleus	29.64	33.08
CDY49079	Canola	nucleus	29.98	32.83
KRG93782	Soybean	nucleus	29.46	32.76
VIT_14s0083g00220.t01	Wine grape	nucleus	34.66	31.8
PGSC0003DMT400008672	Potato	nucleus	9.53	31.07
KRG93822	Soybean	nucleus	23.74	25.28

Protein Annotations

EnsemblPlants:TraesCS4D01G000900.2	EnsemblPlantsGene:TraesCS4D01G000900	Gene3D:4.10.60.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0008270	InterPro:IPR001878	InterPro:PSP_pro-rich	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	ncoils:Coil
PANTHER:PTHR13316	PANTHER:PTHR13316:SF0	PFAM:PF04046	PFscan:PS50158	SEG:seg	SMART:SM00581
SUPFAM:SSF57756	MapMan:16.8.1.2.3.3	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:613462..617936

Molecular Weight (calculated)

63941.1 Da

IEP (calculated)

5.036

GRAVY (calculated)

-1.084

Length

577 amino acids

Sequence
(BLAST)

001: MEEFISLGGD EPEPRASEDL DQPQVQAQVD LNLNLNHAPP PKTETEPLPS HHQPQDSGVV VLEEGQIACQ ESSSSAAVQD AQAKAQEEAL LRANGVGPPP
101: PSRQQPQATK AAACDDIIDL EEGQVEDMDL SDDNAVVVVV TKQHGAVSAE TPKGNNVGPS LSTPTSAFID QSPTRGVKRA RAESTEPSVR VVYNNLTRES
201: KRKLMELMQQ WSEWQARKQH ASTETVEQVL DCGEETYYPA LHVGSERSCA VKSFWVDSQA RGNAAVDDGA VPLYDREFTL GSTPMGDSSN AEGKKDKDDS
301: RCFNCGSYSH ALKDCPKPRD HVAISNARKQ HNLKRNLSNV GNRGQNRYYQ KTPGKFDDLK AGVLGSETRE CLGLRENDPP PWLHRMRELG YPPGYLDEVE
401: DEDKPSGITI FGDGEVKEEQ QQHEEGELPE KGEASPPRKR MTVEFPGINA PVPENGDPWL WGSAPPPPLQ SSSGRHNQHS SSDSRDRAPP APPGVEHYSS
501: SRYHSYDYGP AIPGAGRRSS SGYDDGAWTP SPSFSSRQHL GSGGSRERER ERERERERER ERERDRERDR HYYSNRR

Best Arabidopsis Sequence Match ( AT1G67210.1 )
(BLAST)

001: MAASSGSGLE AEEGEISIDM EEDMDLTEDD FRNVSGQFSG QASIVEVGDA VDVRVETVKV DVSSKSGVKR ARTISLEQQP SVHVTYKHLT RDSKQKLESL
101: LQQWSEWEAE QNSLSEDQEQ VLEAGDETYF PALRVGLQKT SSVSFWFDYQ TGHSSSKKSV PVESSTTPLY NRGFTIGLDS GSNNVEGGLE IIDDPPRCFN
201: CGAYSHSIRE CPRPFDRSAV SNARRQHKRK RNQTPGSRLP SRYYQSLQRG KYDGLKPGSL DAETRKLLGL KELDPPPWLN RMREIGYPPG YFAVEEDDDD
301: HSRITIFGEE ETKEEEEVKT EEGEILEKAS PQEPRKIMTV GFPGINAPIP ENADSWLWEQ RNSNTGHTNY HNHLRPQYEM GPLGIQLSSS FPPMHGIRYD
401: HRFGL

Arabidopsis Description

At1g67210 [Source:UniProtKB/TrEMBL;Acc:Q8LD15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.