Factsheet for Os06t0495700-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0234600-00
Os09t0513700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38600.1	Os03t0234600-00	AT2G32840.1	21798944
AT5G38600.1	Os09t0513700-01	AT2G43370.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05262	Sorghum	nucleus	70.58	66.09
Zm00001d050793_P001	Maize	nucleus	73.46	65.75
TraesCS4B01G002400.2	Wheat	nucleus	58.23	50.72
TraesCS4D01G000900.2	Wheat	nucleus	59.05	49.74
HORVU4Hr1G000670.1	Barley	nucleus	59.26	49.48
TraesCS4A01G000900.1	Wheat	nucleus	58.85	48.97
GSMUA_Achr5P23660_001	Banana	nucleus	45.06	46.79
AT1G67210.1	Thale cress	nucleus	34.77	41.73
Bra034014.1-P	Field mustard	nucleus	37.24	41.14
CDY12628	Canola	nucleus	36.63	40.83
CDY46038	Canola	nucleus	36.63	40.27
KRH18266	Soybean	nucleus	40.53	38.1
KRG93782	Soybean	nucleus	39.09	36.61
Solyc03g045060.2.1	Tomato	nucleus	39.92	36.6
VIT_01s0011g02770.t01	Wine grape	nucleus	29.42	36.57
Bra028416.1-P	Field mustard	nucleus	31.89	36.13
CDX67412	Canola	nucleus	35.8	35.95
AT5G38600.1	Thale cress	nucleus	37.86	34.59
CDY49079	Canola	nucleus	37.04	34.16
VIT_14s0083g00220.t01	Wine grape	nucleus	43.21	33.39
PGSC0003DMT400008672	Potato	nucleus	12.14	33.33
KRG93822	Soybean	nucleus	31.89	28.6

Protein Annotations

MapMan:16.8.1.2.3.3	UniProt:A0A0P0WXA2	ProteinID:BAS97892.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0008270	InterPro:IPR001878	EnsemblPlantsGene:Os06g0495700	EnsemblPlants:Os06t0495700-00	PFAM:PF04046	PFscan:PS50158
InterPro:PSP_pro-rich	PANTHER:PTHR13316	PANTHER:PTHR13316:SF0	SMART:SM00581	SUPFAM:SSF57756	UniParc:UPI000393A499
InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:	:

Description

Beta tubulin, autoregulation binding site domain containing protein. (Os06t0495700-00)

Coordinates

chr6:+:17275641..17279946

Molecular Weight (calculated)

55046.8 Da

IEP (calculated)

5.218

GRAVY (calculated)

-1.143

Length

486 amino acids

Sequence
(BLAST)

001: MKSTHWHLKG MDGEPTTMDS TKVPDVIIDL EEGQVEDMDL SDDDVVVKHQ YLDASIQSST SVADVQTLHG VSVELDKGNG LENGSHASKS ILIDESTIRG
101: VKRARVESTE PSVRVIYSNL TRESKRKLVE LMQQWSEWQT RKQNTLTKAG EEVLECGEET YYPALHVGSE KSCAVSFWVD SQAKEGVVLD DDSVPLYDRE
201: FTLGSTPLGD PSNTERADKD DSRCFNCGSY SHALKECPKP RDNAAINNAR KQHNMKRNQS NVNRGQNRYY QKTPGKFDDL RPGILGPETR ECLGIGENDP
301: PPWLHRMREL GYPPGYLDVV DDEDKPSGIT IFGDEDPKEE YEEGELPDQG EPSPPRKKKT VEFPGINGPI PENGDRWLWD STPPQYSERY HSSDSREERD
401: RGPPGADRYS RYHSYDYGPA SPSHGRSHPD RGWRSSSGYE NLPADDGAWT PHAYSSRQYS SQYSTSSETS SRHSRDRHDR HYHHRR

Best Arabidopsis Sequence Match ( AT1G67210.1 )
(BLAST)

001: MAASSGSGLE AEEGEISIDM EEDMDLTEDD FRNVSGQFSG QASIVEVGDA VDVRVETVKV DVSSKSGVKR ARTISLEQQP SVHVTYKHLT RDSKQKLESL
101: LQQWSEWEAE QNSLSEDQEQ VLEAGDETYF PALRVGLQKT SSVSFWFDYQ TGHSSSKKSV PVESSTTPLY NRGFTIGLDS GSNNVEGGLE IIDDPPRCFN
201: CGAYSHSIRE CPRPFDRSAV SNARRQHKRK RNQTPGSRLP SRYYQSLQRG KYDGLKPGSL DAETRKLLGL KELDPPPWLN RMREIGYPPG YFAVEEDDDD
301: HSRITIFGEE ETKEEEEVKT EEGEILEKAS PQEPRKIMTV GFPGINAPIP ENADSWLWEQ RNSNTGHTNY HNHLRPQYEM GPLGIQLSSS FPPMHGIRYD
401: HRFGL

Arabidopsis Description

At1g67210 [Source:UniProtKB/TrEMBL;Acc:Q8LD15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.