Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G38600.1 | EER92590 | AT2G32840.1 | 21798944 |
| AT5G38600.1 | EER97037 | AT2G43370.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d050793_P001 | Maize | nucleus | 83.81 | 80.11 |
| Os06t0495700-00 | Rice | nucleus | 66.09 | 70.58 |
| TraesCS4B01G002400.2 | Wheat | nucleus | 57.8 | 53.76 |
| TraesCS4D01G000900.2 | Wheat | nucleus | 58.57 | 52.69 |
| HORVU4Hr1G000670.1 | Barley | nucleus | 56.84 | 50.69 |
| GSMUA_Achr5P23660_001 | Banana | nucleus | 45.09 | 50.0 |
| TraesCS4A01G000900.1 | Wheat | nucleus | 55.88 | 49.66 |
| AT1G67210.1 | Thale cress | nucleus | 33.91 | 43.46 |
| CDY12628 | Canola | nucleus | 35.84 | 42.66 |
| Bra034014.1-P | Field mustard | nucleus | 35.65 | 42.05 |
| CDY46038 | Canola | nucleus | 35.26 | 41.4 |
| KRH18266 | Soybean | nucleus | 39.69 | 39.85 |
| KRG93782 | Soybean | nucleus | 37.96 | 37.96 |
| VIT_01s0011g02770.t01 | Wine grape | nucleus | 27.75 | 36.83 |
| CDX67412 | Canola | nucleus | 34.1 | 36.57 |
| Solyc03g045060.2.1 | Tomato | nucleus | 37.19 | 36.42 |
| Bra028416.1-P | Field mustard | nucleus | 29.67 | 35.9 |
| AT5G38600.1 | Thale cress | nucleus | 36.42 | 35.53 |
| CDY49079 | Canola | nucleus | 35.26 | 34.72 |
| PGSC0003DMT400008672 | Potato | nucleus | 11.75 | 34.46 |
| VIT_14s0083g00220.t01 | Wine grape | nucleus | 41.43 | 34.18 |
| KRG93822 | Soybean | nucleus | 31.98 | 30.63 |
Protein Annotations
| MapMan:16.8.1.2.3.3 | Gene3D:4.10.60.10 | EntrezGene:8068899 | UniProt:C5XUX4 | EnsemblPlants:EES05262 | ProteinID:EES05262 |
| ProteinID:EES05262.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0008270 | InterPro:IPR001878 |
| PFAM:PF04046 | PFscan:PS50158 | InterPro:PSP_pro-rich | PANTHER:PTHR13316 | PANTHER:PTHR13316:SF0 | SMART:SM00581 |
| EnsemblPlantsGene:SORBI_3004G180900 | SUPFAM:SSF57756 | unigene:Sbi.4621 | UniParc:UPI0001A85847 | RefSeq:XP_002452286.1 | InterPro:Znf_CCHC |
| InterPro:Znf_CCHC_sf | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:+:53326134..53335407
Molecular Weight (calculated)
58186.2 Da
IEP (calculated)
4.850
GRAVY (calculated)
-1.061
Length
519 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDEFISLE SPCEADAQDE GGDVQVAPDV NGAEPLASEL QPEGESGVLG SNPKPSAGNL DLEEGQMEDM DITDDDIVVG KDQHVTSVAA VQTVIGFEVK
101: LDKGDVTENA PIYESNSIPV EESSSRGVKR ARVESKEPSI RVIYSDLTRE SKRKLMQLMQ QWSEWQARRQ HHLKEAVEGT LESGEETYYP ALHVGSEKSC
201: AVSFWVDNQA RESDIVDDDS VPLYDREFTL GSTPLGDSSN TERADKDDSR CFNCGSYSHA LKDCPKPRDN FAISNARKQH NLKRNQSNVN RVQNRYYQKT
301: PGKFDDLKAG VLGPETRQCL GIGENDPPPW LHRMRELGYP PGYLDVVDDE DKPSGITIFG DGEMKLEYEE GELSEQAEAS PPKKRMTVEF PGINAPVPEN
401: GDQWLWGSAP PQSSSRHHSL DSRDYRDRGP PGADHYSSRY HSHDYGPLSP SLGRSHSDRG WRSPPRYDNP PADDGAWTPH SYPSRQYSGH YSSSSDMSSR
501: HSRDRDRDRH DSRHYHHRR
101: LDKGDVTENA PIYESNSIPV EESSSRGVKR ARVESKEPSI RVIYSDLTRE SKRKLMQLMQ QWSEWQARRQ HHLKEAVEGT LESGEETYYP ALHVGSEKSC
201: AVSFWVDNQA RESDIVDDDS VPLYDREFTL GSTPLGDSSN TERADKDDSR CFNCGSYSHA LKDCPKPRDN FAISNARKQH NLKRNQSNVN RVQNRYYQKT
301: PGKFDDLKAG VLGPETRQCL GIGENDPPPW LHRMRELGYP PGYLDVVDDE DKPSGITIFG DGEMKLEYEE GELSEQAEAS PPKKRMTVEF PGINAPVPEN
401: GDQWLWGSAP PQSSSRHHSL DSRDYRDRGP PGADHYSSRY HSHDYGPLSP SLGRSHSDRG WRSPPRYDNP PADDGAWTPH SYPSRQYSGH YSSSSDMSSR
501: HSRDRDRDRH DSRHYHHRR
001: METEDVLDIP ASSNFGSEVK KNSLESGNGS PEANSLVGND ENVKGNLDLD LTEENLRIVG GQESGEILTE QVSDVFNASV ESVAVDEKLG IQKETLVHST
101: TLDVSSKAGV KRPRTSYDEQ QPTVHVTYKH LTRASKQKLE SLLQKWSEWE AENTSLAQDQ EQLFESGEET CFPAIRVGLQ KTSSVSFWID NQTGHKPLED
201: FVLVESSTTP LYDRKFAIGL NSADGSRNVE GGLEIIDDDP PRCFNCGGYS HSLRECPRPF DRSAVNSARK LQKSKRNQNS SGPRLPSRYY QKTQTGKYDG
301: LKPGTLDAET RQLLNLGELD PPPWLNRMRE IGYPPGYLAP EDDHLSGITI FGEEVETREE IESEDGEILE KANHPPEPQM KKTVEFPGIN APFPENADEW
401: LWEAAPSHRN SSRSGRWQQQ KTSRGHDYRD DGPLGVEPSS YPPRYGSRYD YGYGSNEYGS RSRSPGIDRS LSERSKRDYS SYDADFRERD RDRDRNRDRD
501: RDRDWDRDRD RDCDRDRDRD DRDWSYRLSS RR
101: TLDVSSKAGV KRPRTSYDEQ QPTVHVTYKH LTRASKQKLE SLLQKWSEWE AENTSLAQDQ EQLFESGEET CFPAIRVGLQ KTSSVSFWID NQTGHKPLED
201: FVLVESSTTP LYDRKFAIGL NSADGSRNVE GGLEIIDDDP PRCFNCGGYS HSLRECPRPF DRSAVNSARK LQKSKRNQNS SGPRLPSRYY QKTQTGKYDG
301: LKPGTLDAET RQLLNLGELD PPPWLNRMRE IGYPPGYLAP EDDHLSGITI FGEEVETREE IESEDGEILE KANHPPEPQM KKTVEFPGIN APFPENADEW
401: LWEAAPSHRN SSRSGRWQQQ KTSRGHDYRD DGPLGVEPSS YPPRYGSRYD YGYGSNEYGS RSRSPGIDRS LSERSKRDYS SYDADFRERD RDRDRNRDRD
501: RDRDWDRDRD RDCDRDRDRD DRDWSYRLSS RR
Arabidopsis Description
Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein [Source:UniProtKB/TrEMBL;Acc:Q93YW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.