Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P09080_001 | Banana | nucleus | 42.33 | 67.03 |
| Os09t0513700-01 | Rice | nucleus | 53.09 | 61.87 |
| CDY22251 | Canola | cytosol | 20.37 | 57.79 |
| CDX83484 | Canola | nucleus | 42.33 | 57.45 |
| Bra000304.1-P | Field mustard | nucleus | 42.11 | 57.32 |
| CDY44222 | Canola | nucleus | 41.65 | 57.05 |
| TraesCS5D01G304800.1 | Wheat | nucleus | 53.09 | 55.37 |
| KRH01744 | Soybean | nucleus | 43.48 | 54.76 |
| KRH46935 | Soybean | nucleus | 40.96 | 54.74 |
| CDY23361 | Canola | endoplasmic reticulum | 31.81 | 54.51 |
| AT2G43370.1 | Thale cress | nucleus | 41.42 | 54.35 |
| VIT_05s0102g00080.t01 | Wine grape | nucleus | 41.65 | 53.53 |
| TraesCS5A01G298000.1 | Wheat | nucleus | 52.86 | 51.91 |
| CDY14697 | Canola | cytosol, mitochondrion | 21.05 | 50.83 |
| Solyc09g098390.2.1 | Tomato | nucleus | 40.5 | 49.86 |
| PGSC0003DMT400055636 | Potato | nucleus | 40.05 | 49.72 |
| TraesCS5B01G297000.2 | Wheat | nucleus | 53.32 | 49.57 |
| HORVU5Hr1G078170.27 | Barley | nucleus | 51.03 | 48.27 |
| Zm00001d021137_P002 | Maize | nucleus | 52.4 | 46.83 |
| EER95096 | Sorghum | nucleus | 23.34 | 21.07 |
| EER91800 | Sorghum | nucleus | 21.97 | 19.75 |
Protein Annotations
| MapMan:16.4.4.1.1 | Gene3D:3.30.70.330 | EntrezGene:8054808 | UniProt:C5X5D1 | EnsemblPlants:EER97037 | ProteinID:EER97037 |
| ProteinID:EER97037.1 | GO:GO:0000243 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005689 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0017069 |
| GO:GO:0071011 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR13952 | PANTHER:PTHR13952:SF6 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | EnsemblPlantsGene:SORBI_3002G262700 |
| SUPFAM:SSF54928 | unigene:Sbi.8063 | UniParc:UPI0001A8389C | RefSeq:XP_002460516.1 | SEG:seg | InterPro:snRNP35_RRM |
Description
hypothetical protein
Coordinates
chr2:+:64770726..64774188
Molecular Weight (calculated)
50868.4 Da
IEP (calculated)
9.753
GRAVY (calculated)
-1.511
Length
437 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGSVSAVF YADKYHPIQA GSIDGTDVAP HDNAVLRALI CSQAGLYDPF GDPKASGDPY CTVFVGRLSR QTDDDTLRKA MSRYGRVKSM RLVRDIVTGA
101: SRGYAFVEYE TDREMRRAYE DAHHSIIDGS EVIVDYYRQQ LMPGWIPRRL GGGLGGMKES GQLRFGGRER PFRAPLRPIP YDELKKLGIP PPPEGRYMTR
201: YQVPPPPRRK SSKVDIEDSP PRRRSKDGAG VSTYRRQISS TDDDETPRRR KSSHDGPEES QSRRSTRSSI TREDNRYSRQ RKSKGHDEGY HMHRRSQEAG
301: EVSPPEEGGS YERERTSEEP GRGTDRYHHH RHHTEGTYES RYSHHRGHRK RRRSQELGEL SPPEEDVSYE KERTSDEPGR SPDRYHHHRH HREDTYESRH
401: SHHREDTYES RHSHHRDRRR HGDRHHSKRS ESRDYRD
101: SRGYAFVEYE TDREMRRAYE DAHHSIIDGS EVIVDYYRQQ LMPGWIPRRL GGGLGGMKES GQLRFGGRER PFRAPLRPIP YDELKKLGIP PPPEGRYMTR
201: YQVPPPPRRK SSKVDIEDSP PRRRSKDGAG VSTYRRQISS TDDDETPRRR KSSHDGPEES QSRRSTRSSI TREDNRYSRQ RKSKGHDEGY HMHRRSQEAG
301: EVSPPEEGGS YERERTSEEP GRGTDRYHHH RHHTEGTYES RYSHHRGHRK RRRSQELGEL SPPEEDVSYE KERTSDEPGR SPDRYHHHRH HREDTYESRH
401: SHHREDTYES RHSHHRDRRR HGDRHHSKRS ESRDYRD
001: MSGGGNNVVN KVFYATSYHP IQAGSIDGTD VAPHDNGVRR ALLCYNAGLY DPSGDSKAVG DPYCTLFVGR LSHHTTEDTL REVMSKYGRI KNLRLVRHIV
101: TGASRGYGFV EYETEKEMLR AYEDAHHSLI DGREIIVDYN RQQLMPGWIP RRLGGGLGGR KESGQLRFGG RDRPFRAPLR PIPHEDLKKL GIQLPPEGRY
201: MSRTQIPSPP RRKGSVSDRE EEYYREKSSV EREEEFKERS SLRSYHSHRS SAHTHSSHRR RSKDREECSR EESRSDRKER ARGMEDRYGD NKGEVSGSKR
301: SKRSEEDRSR KRHKHLPSHH HRRSYSQDHH SSD
101: TGASRGYGFV EYETEKEMLR AYEDAHHSLI DGREIIVDYN RQQLMPGWIP RRLGGGLGGR KESGQLRFGG RDRPFRAPLR PIPHEDLKKL GIQLPPEGRY
201: MSRTQIPSPP RRKGSVSDRE EEYYREKSSV EREEEFKERS SLRSYHSHRS SAHTHSSHRR RSKDREECSR EESRSDRKER ARGMEDRYGD NKGEVSGSKR
301: SKRSEEDRSR KRHKHLPSHH HRRSYSQDHH SSD
Arabidopsis Description
SNRNP35U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:Q8VY74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.