CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES03779
EES04688
EES11610
KXG20371
KXG23720
KXG37841
OQU84043
OQU88590

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53060.1	EES03779	AT3G60360.1	21798944
AT5G53060.1	KXG23720	AT4G24680.1	21798944
AT5G53060.1	OQU84043	AT4G24680.1	21798944
AT5G53060.1	KXG37841	AT5G04280.1	21798944
AT5G53060.1	OQU88590	AT5G04280.1	21798944
AT5G53060.1	EES04688	AT5G06770.1	21798944
AT5G53060.1	EES11610	AT5G06770.1	21798944
AT5G53060.1	KXG20371	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046033_P001	Maize	nucleus	93.41	93.55
Zm00001d037055_P003	Maize	nucleus	92.07	83.11
HORVU7Hr1G082230.1	Barley	nucleus	77.4	82.59
TraesCS7A01G333800.1	Wheat	nucleus	81.74	81.74
Os06t0342500-01	Rice	cytosol	80.99	81.72
TraesCS7D01G341400.1	Wheat	nucleus	82.04	81.43
TraesCS7B01G245400.2	Wheat	nucleus	81.89	77.04
GSMUA_Achr2P15270_001	Banana	nucleus	60.03	57.7
KRH53532	Soybean	nucleus	47.9	49.46
KRH64403	Soybean	nucleus	47.46	49.22
VIT_16s0098g01660.t01	Wine grape	nucleus	47.9	48.41
AT5G53060.1	Thale cress	nucleus	46.11	47.24
Solyc03g082980.2.1	Tomato	nucleus	47.01	47.01
CDX96185	Canola	nucleus	44.91	46.8
Bra022624.1-P	Field mustard	nucleus	45.06	45.54
PGSC0003DMT400047665	Potato	nucleus	46.71	45.48
Bra003085.1-P	Field mustard	nucleus	43.41	45.38
CDY27030	Canola	nucleus	45.06	45.26
CDY56908	Canola	nucleus	42.81	44.97
CDY49453	Canola	nucleus	42.96	44.7
KXG39277	Sorghum	nucleus	17.81	21.96
OQU80050	Sorghum	nucleus	20.66	21.94
KXG35952	Sorghum	plastid	19.31	20.74
EER94472	Sorghum	cytosol	13.02	19.25
OQU88922	Sorghum	nucleus, peroxisome, plastid	18.26	18.94
KXG38256	Sorghum	nucleus	22.6	18.88
EES02175	Sorghum	nucleus, plastid	20.21	18.85
EES16283	Sorghum	cytosol	13.32	17.49
OQU91315	Sorghum	plastid	11.23	15.43
KXG29352	Sorghum	cytosol	10.63	13.76
EER94248	Sorghum	nucleus	11.23	12.76

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	UniProt:A0A194YJB2	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0006139	GO:GO:0006412	GO:GO:0006950	GO:GO:0006970	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607
GO:GO:0009628	GO:GO:0009719	GO:GO:0009867	GO:GO:0009987	GO:GO:0010286	GO:GO:0010445
GO:GO:0010468	GO:GO:0019538	GO:GO:0031053	GO:GO:0040029	GO:GO:0070878	GO:GO:1900150
InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EnsemblPlants:KXG20038	ProteinID:KXG20038
ProteinID:KXG20038.1	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF134	SMART:SM00322
EnsemblPlantsGene:SORBI_3010G145800	SUPFAM:SSF54791	UniParc:UPI0007F2044E	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:+:41279629..41293580

Molecular Weight (calculated)

72380.5 Da

IEP (calculated)

5.808

GRAVY (calculated)

-0.483

Length

668 amino acids

Sequence
(BLAST)

001: MDRSRSKRGY HYDQDSPPPR SKQRFDRRSG GGGGGQNANS SYHRRGPPSG GGGSDRRAFL PPDAAPPPPP PPPPSTAAAG GGAGPTTTTS FRILCPECKA
101: YGFPPGFVAK VRDESGAFVT VHPPFAGDYV RIIETVDGAR READGRPPMF SPAQEALLMV HRRILETDAD DGDEDGEYGP RGKDPRDRGK TTTRLIVPKL
201: HVGCLLGKGG KIIEQMRMET KTHIRILPRD QHTPRCVSLS EEVVQVVGDG NCVKKAVAII TDRLKESLHR DRGPFRGRMN SPEPRISQED EYLGGVQQMP
301: AYEEPLGRPD QFRNNISMEP PGYEFDSNGG KVIEHPDILY DDIVFRILCP NDKADSLVAT RDGILEMLQA DVGVDVRLSD IIAGSDERVV IITSREGPDN
401: ELFPAQEAVL HIQTHIVDLG PDKDNIITTR LLVPSSEIAC FDGREGSLSD IQRQTSANVQ ILPREDLPSC ALESDEIIQI VGEIRAARNA LIQVTTKLRS
501: FLYREMSGPI QVGNINVHGA ISPVAGSPRG PYQGNDIPMG AYHQASQLAT SWHSKDSGGS ASGSFEQGSS INDDIRQNTT KRFAVPLVTR STLEVVIPNS
601: AVASLTMRAG SKLAQISEIS GATVTLAEDR PDILEKVVRI SGTPEQASKA ENLLQGFILS IPDDIPSA

Best Arabidopsis Sequence Match ( AT5G53060.1 )
(BLAST)

001: MERSRSKRNY HYDQDYDGDS MPRSKPRYNN NYHFGGGGGG NNRYRGGGGG GGGNGRPSKS HPETMATTTY RILCHDAKAG GVIGKSGTII KSIRQHTGAW
101: INVHELVPGD AERIIEISDN RRRDPDGRMP SFSPAQEALF SVHDRILESE AQFGYGGPPP EEEEDYGGVR PGGGRVVTRL VVSRMHVGCL LGKGGKIIEQ
201: MRIETKTHIR ILPRESNLPR CVSLSEEIVQ IVGELNAVKN ALAIVSSRLR ESQHRDRSNF QGRSHSPERS FAAAGDDYMP QLRRQSSDRF PRGNFRNNNF
301: SSRQSNYAEE APAVPVGENV YSEELVFQIL CPADKIVRVV GESQGIIDLL QNEIGVDVRV SDPVAGSDEQ IITISSEEAP DDPFFPAQEA LLHIQTQIID
401: LIPDKDNLIT TRLLVPSRDS ICLEGKAGSV SEISRLTGTS VQILAREEIP RCASINDVVI QITGEIRAAR EALVELTLLL RSHMFKELSQ KETPPASTST
501: TGPLEGVAGV MEVASSNNTI QSREGPTSSN LNLQQVSTIL PQFKEGFGSV AKAGESEHRE EVPVTTSRMA VPLVTRSTLE VVLPEAVVPK LVTKSRNKLA
601: QISEWSGASV TIVEDRPEET QNIIRISGTP EQAERAQSLL QGFILSIQED GP

Arabidopsis Description

RCF3RNA-binding KH domain-containing protein RCF3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.