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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d015093_P001 Maize cytosol 70.35 77.56
TraesCS6B01G113100.1 Wheat cytosol 51.36 56.75
TraesCS6A01G084000.1 Wheat cytosol 52.52 56.58
Os02t0125500-00 Rice cytosol 47.09 55.35
HORVU6Hr1G014510.1 Barley cytosol, mitochondrion, nucleus, plastid 50.39 52.53
Solyc05g041740.1.1 Tomato plastid 17.83 43.81
KRH02776 Soybean nucleus 35.66 42.2
KRH19104 Soybean nucleus 35.27 41.74
KRH12329 Soybean cytosol, nucleus 34.88 40.72
KRH37335 Soybean cytosol, nucleus 33.91 39.5
Solyc08g074330.1.1 Tomato plastid 16.67 37.89
EER94472 Sorghum cytosol 33.14 37.83
VIT_11s0052g00030.t01 Wine grape plastid 33.91 37.55
Solyc05g043210.1.1 Tomato plastid 18.22 37.15
PGSC0003DMT400076105 Potato plastid 31.59 35.28
Solyc07g008490.2.1 Tomato nucleus 32.56 34.85
AT4G26000.1 Thale cress cytosol 32.17 33.54
CDY49999 Canola cytosol, endoplasmic reticulum, nucleus 30.43 32.71
Bra019133.1-P Field mustard cytosol 25.19 32.66
CDY42768 Canola cytosol 31.2 32.66
GSMUA_Achr8P14980_001 Banana cytosol 35.27 32.5
CDX89376 Canola cytosol 26.74 32.47
CDX92741 Canola cytosol 31.01 32.45
Bra013940.1-P Field mustard cytosol 26.55 32.24
GSMUA_Achr11P... Banana mitochondrion 34.88 31.41
CDY65294 Canola cytosol 25.97 30.52
Solyc05g042180.1.1 Tomato plastid 15.31 28.94
PGSC0003DMT400046406 Potato cytosol 32.75 28.64
Solyc05g043200.1.1 Tomato nucleus, peroxisome, plastid 17.05 27.5
EES16283 Sorghum cytosol 26.36 26.72
OQU91315 Sorghum plastid 24.22 25.72
EER94248 Sorghum nucleus 23.06 20.24
KXG39277 Sorghum nucleus 17.44 16.61
OQU80050 Sorghum nucleus 15.31 12.56
EES02175 Sorghum nucleus, plastid 16.09 11.59
KXG20038 Sorghum nucleus 13.76 10.63
OQU88922 Sorghum nucleus, peroxisome, plastid 12.98 10.4
KXG38256 Sorghum nucleus 15.31 9.88
KXG35952 Sorghum plastid 10.47 8.68
Protein Annotations
Gene3D:3.30.1370.10Gene3D:3.30.310.210MapMan:35.1UniProt:A0A194YMC4GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0005488InterPro:IPR036612InterPro:KH_domInterPro:KH_dom_type_1InterPro:KH_dom_type_1_sf
EnsemblPlants:KXG29352ProteinID:KXG29352ProteinID:KXG29352.1PFAM:PF00013PFscan:PS50084PANTHER:PTHR10288
PANTHER:PTHR10288:SF169SMART:SM00322EnsemblPlantsGene:SORBI_3004G024400SUPFAM:SSF54791UniParc:UPI0007F2CF33SEG:seg
Description
hypothetical protein
Coordinates
chr4:+:1987999..1992778
Molecular Weight (calculated)
57486.2 Da
IEP (calculated)
4.638
GRAVY (calculated)
-0.567
Length
516 amino acids
Sequence
(BLAST)
001: MEPPSPPRPC EEEEEEEAEI DFDEEEEDPE EVEPWFTSSS DSEAEREPKR PAALEPPPPP IPFPAPAWAV PPEQQPAPIT AVEAEKKGDG DSDARPRWPG
101: TNVFRLVVPT DKVGGVIGRR GETIKRLCDE TRARIRVLDA PLGAACRIVL VSAKEEVEAE MSPAMNAAIK IFKHINEIEE INSDGTLSAS ASDICSVRLL
201: VPFEQAVHLI GKQGVTIKSI EESTGTTVRI RDEDELLSHE TVDERIVEIR GASLKVLNAL KSVLELLRKF LVDHGVLHLF ERKNQEVVQP QDASNYPLAV
301: NQDFLLSDQR SHGDPISSRL LYGHDPSFCG PHHATDSLMI QSRANPKGSR FLYGRDPSFH DPYSRDLSQP TDSLITKITR TMQVPLAYAE DVIGVRGENI
401: EYIRSVSGAV VALEEIGDYQ EVQVMIEGTP SQVQTAHQLV QEVISGDRAP PSRSSYYNSE GADPGLLNSP HVGSRFLHSP RAIATSREYL PWQYEEQTPH
501: GHWRNPTHYD YRGYRP
Best Arabidopsis Sequence Match ( AT4G26000.1 )
(BLAST)
001: MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL
Arabidopsis Description
PEPRNA-binding KH domain-containing protein PEPPER [Source:UniProtKB/Swiss-Prot;Acc:Q9SZH4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.