Factsheet for GSMUA_Achr8P14980_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	mitochondrion	73.21	71.55
KRH19104	Soybean	nucleus	48.57	62.39
KRH02776	Soybean	nucleus	48.21	61.93
VIT_11s0052g00030.t01	Wine grape	plastid	51.07	61.37
KRH12329	Soybean	cytosol, nucleus	46.61	59.05
KRH37335	Soybean	cytosol, nucleus	45.89	58.01
Zm00001d000030_P001	Maize	cytosol, extracellular, nucleus, plasma membrane	44.82	56.92
Zm00001d029973_P001	Maize	plasma membrane	45.18	56.47
Os10t0564000-01	Rice	cytosol	45.89	56.11
EER94472	Sorghum	cytosol	45.0	55.75
TraesCS1A01G216900.1	Wheat	cytosol	44.46	55.33
TraesCS1B01G229900.1	Wheat	cytosol	44.29	55.23
TraesCS1D01G218700.1	Wheat	cytosol	44.29	55.11
Solyc07g008490.2.1	Tomato	nucleus	46.96	54.56
HORVU1Hr1G055480.1	Barley	plastid	46.61	51.99
Bra019133.1-P	Field mustard	cytosol	33.75	47.49
PGSC0003DMT400076105	Potato	plastid	39.11	47.4
AT4G26000.1	Thale cress	cytosol	41.43	46.87
Solyc08g074330.1.1	Tomato	plastid	18.93	46.7
CDY42768	Canola	cytosol	41.07	46.65
CDX92741	Canola	cytosol	41.07	46.65
Solyc05g041740.1.1	Tomato	plastid	16.96	45.24
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	38.39	44.79
PGSC0003DMT400046406	Potato	cytosol	46.96	44.58
GSMUA_Achr7P01590_001	Banana	nucleus	33.75	42.95
Solyc05g043210.1.1	Tomato	plastid	19.11	42.29
CDX89376	Canola	cytosol	29.46	38.82
Bra013940.1-P	Field mustard	cytosol	29.46	38.82
TraesCS6B01G113100.1	Wheat	cytosol	31.96	38.33
CDY65294	Canola	cytosol	30.0	38.27
Os02t0125500-00	Rice	cytosol	29.82	38.04
TraesCS6A01G084000.1	Wheat	cytosol	32.14	37.58
HORVU6Hr1G014510.1	Barley	cytosol, mitochondrion, nucleus, plastid	33.21	37.58
GSMUA_Achr5P03200_001	Banana	cytosol	17.68	37.36
Solyc05g042180.1.1	Tomato	plastid	18.04	37.0
Zm00001d015093_P001	Maize	cytosol	30.18	36.11
KXG29352	Sorghum	cytosol	32.5	35.27
Solyc05g043200.1.1	Tomato	nucleus, peroxisome, plastid	18.57	32.5
GSMUA_Achr7P11520_001	Banana	mitochondrion, nucleus	19.11	20.19
GSMUA_Achr6P10750_001	Banana	nucleus	17.14	18.05
GSMUA_Achr3P21030_001	Banana	nucleus	16.79	14.11
GSMUA_Achr10P...	Banana	cytosol	16.07	13.6
GSMUA_Achr6P13890_001	Banana	cytosol	15.89	13.59
GSMUA_Achr10P...	Banana	nucleus	15.54	12.91
GSMUA_Achr6P03670_001	Banana	cytosol, nucleus, plastid	15.0	12.9
GSMUA_Achr9P18150_001	Banana	endoplasmic reticulum, golgi	14.64	11.87
GSMUA_Achr2P15270_001	Banana	nucleus	13.93	11.22

Protein Annotations

EnsemblPlants:GSMUA_Achr8P14980_001	EnsemblPlants:GSMUA_Achr8T14980_001	EnsemblPlantsGene:GSMUA_Achr8G14980_001	Gene3D:3.30.1370.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
ncoils:Coil	PANTHER:PTHR10288	PANTHER:PTHR10288:SF132	PFAM:PF00013	PFscan:PS50084	SEG:seg
SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI000296FC4D	UniProt:M0TQK1	MapMan:35.1	:

Description

Putative Poly(rC)-binding protein 3 [Source:GMGC_GENE;Acc:GSMUA_Achr8G14980_001]

Coordinates

chr8:-:12501563..12506891

Molecular Weight (calculated)

60655.2 Da

IEP (calculated)

4.595

GRAVY (calculated)

-0.370

Length

560 amino acids

Sequence
(BLAST)

001: MYFWSRQEKP NTVGVEPNPA HFRRLTFTCE ACTCKDHLMV LKLDTVDRVV IDRFIEQRNL NPVAPFHLPQ LPKPFFLRSI LLPGMAAEPE NSAGNETSAE
101: AETKAEVPSS PAAEAETEEN DAAAEEDEEE EEEDEEEAEE EDAAEDESPP AEAAPTAQGG GVEVKKWPGW PGDNVFRLVV PVLKVGSIIG RKGELIKKLC
201: EETKARVRIL EGPIGVSDRI VLISGKEEPE AEISPAMDAV LRIFKRVNGI SDISSNSGSV PGTCSVRLLV ASSQAVNLIG KKGEAIRSIQ ESSNATVRVL
301: SGELPFYAAP DERIVEIQGE SLKVLKALEA VTGHLRKFLV DHSVLPLFEK SYNTPVTQDR PVDTWGENTQ SYSHGVQQSA IGNDYGLPLK RDSFFIDRES
401: QLDSQIPRSG LALYGQDPAV SGLRSSALGR TGSALEVTQK MQIPLTYAED IIGIGGGNIA YIRRTSGAVI TVQETRGLPD EITVEMKGTT AQVHVARQLV
501: QEFITGRREP VSSNYGGVDT GLRSSYSQLA STAYPSSSYA SHSYGGYGSS GLGGYGGYRP

Best Arabidopsis Sequence Match ( AT4G26000.1 )
(BLAST)

001: MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL

Arabidopsis Description

PEPRNA-binding KH domain-containing protein PEPPER [Source:UniProtKB/Swiss-Prot;Acc:Q9SZH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.