CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42768	Canola	cytosol	83.12	80.93
CDX92741	Canola	cytosol	82.71	80.53
AT4G26000.1	Thale cress	cytosol	82.92	80.4
CDX89376	Canola	cytosol	56.04	63.29
CDY65294	Canola	cytosol	57.5	62.87
KRH19104	Soybean	nucleus	51.67	56.88
KRH02776	Soybean	nucleus	50.83	55.96
VIT_11s0052g00030.t01	Wine grape	plastid	53.54	55.15
KRH12329	Soybean	cytosol, nucleus	50.0	54.3
KRH37335	Soybean	cytosol, nucleus	50.0	54.18
Solyc07g008490.2.1	Tomato	nucleus	47.71	47.51
TraesCS1A01G216900.1	Wheat	cytosol	43.12	46.0
TraesCS1D01G218700.1	Wheat	cytosol	42.92	45.78
TraesCS1B01G229900.1	Wheat	cytosol	42.71	45.66
Zm00001d000030_P001	Maize	cytosol, extracellular, nucleus, plasma membrane	41.46	45.12
Zm00001d029973_P001	Maize	plasma membrane	41.88	44.87
EER94472	Sorghum	cytosol	42.08	44.69
Os10t0564000-01	Rice	cytosol	42.29	44.32
HORVU1Hr1G055480.1	Barley	plastid	43.54	41.63
PGSC0003DMT400046406	Potato	cytosol	47.92	38.98
GSMUA_Achr11P...	Banana	mitochondrion	46.25	38.74
GSMUA_Achr8P14980_001	Banana	cytosol	44.79	38.39
Os02t0125500-00	Rice	cytosol	31.04	33.94
Zm00001d015093_P001	Maize	cytosol	30.62	31.41
TraesCS6B01G113100.1	Wheat	cytosol	30.42	31.26
TraesCS6A01G084000.1	Wheat	cytosol	31.04	31.11
KXG29352	Sorghum	cytosol	32.71	30.43
HORVU6Hr1G014510.1	Barley	cytosol, mitochondrion, nucleus, plastid	30.83	29.9
CDY40663	Canola	cytosol	33.96	28.95
CDX74180	Canola	cytosol	33.96	28.95
CDY64706	Canola	nucleus	23.33	27.72
CDX99471	Canola	nucleus	10.83	24.19
CDY60930	Canola	nucleus	18.75	16.92
CDX69536	Canola	nucleus	18.54	16.73
CDY03018	Canola	nucleus	16.04	16.45
CDX81615	Canola	cytosol	15.42	16.12
CDX70604	Canola	nucleus	19.17	15.86
CDY33769	Canola	nucleus	15.83	15.67
CDX78623	Canola	nucleus	19.38	15.5
CDY49107	Canola	nucleus	15.0	15.16
CDY45180	Canola	cytosol	13.12	14.89
CDY39336	Canola	mitochondrion	14.58	14.8
CDX78846	Canola	nucleus	16.67	13.94
CDY33460	Canola	nucleus	18.12	13.57
CDX77643	Canola	nucleus	17.71	13.3
CDY52947	Canola	plastid	15.83	13.19
CDY46555	Canola	plastid	15.62	12.91
CDY13742	Canola	mitochondrion	15.83	12.14
CDX89490	Canola	cytosol	15.62	12.12
CDY25609	Canola	cytosol	15.42	11.92
CDX76904	Canola	mitochondrion, nucleus, peroxisome, plastid	15.21	11.57
CDX96185	Canola	nucleus	15.0	11.23
CDY27030	Canola	nucleus	15.21	10.98
CDX84522	Canola	nucleus	16.67	10.8
CDY56908	Canola	nucleus	13.96	10.53
CDY49453	Canola	nucleus	13.96	10.44
CDY51849	Canola	cytosol	2.29	10.38
CDX99470	Canola	nucleus	5.0	8.86

Protein Annotations

Gene3D:3.30.1370.10	MapMan:35.1	GO:A0A078IKQ1	UniProt:A0A078IKQ1	EnsemblPlants:CDY49999	ProteinID:CDY49999
ProteinID:CDY49999.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00094203001
InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF132	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0004EDF5EE	SEG:seg

Description

BnaC08g12060DBnaC08g12060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKQ1]

Coordinates

chrLK032874:+:1276..3465

Molecular Weight (calculated)

52268.6 Da

IEP (calculated)

4.590

GRAVY (calculated)

-0.236

Length

480 amino acids

Sequence
(BLAST)

001: MAAVADSVDN CATIFPENQT PIPSGVTATT LLNENSDAFP ELNQPDSSAA AERWPGWPGD CVFRVIVPIA KVGAIIGRKG DIIRKMCEET RARIKVLDGP
101: ATTQDRVVLI SAKEDLEAYM SPAMEAVVRV FRRVSELPDN DDDDDVQKAG SAVSSVRLLV ASMQAISLIG KQGSSIKAIV ENSGASVRIL SEEETPFYAG
201: QDERIVDVQG EALKIAKALE AIVGHLRKFL VDHSVVPLFE KQYLARVSQV RQEEPLAENK SSLHTLSSNV MESDLSLLAR REPLFLERDP RVESRVQPSA
301: ASMYSQDPVL AATLARVSAA FVTQVSQTMQ IPFSYAEDII GLEGANIAYI RRSSGATVTI QESPHPDEIT VEIKGTSSQV QTAQLLIQEF ISNHKEPVSV
401: SGGYARVDTG YVPAVYPPQL SNRQEPLTST YTGTETVQYR PTSYSQLPGQ STYTPTLTGQ TYDTEYRPAS DVNGYSSYSL

Best Arabidopsis Sequence Match ( AT4G26000.1 )
(BLAST)

001: MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL

Arabidopsis Description

PEPRNA-binding KH domain-containing protein PEPPER [Source:UniProtKB/Swiss-Prot;Acc:Q9SZH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.