CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89376	Canola	cytosol	89.52	92.47
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	62.87	57.5
CDX92741	Canola	cytosol	64.24	57.2
AT4G26000.1	Thale cress	cytosol	64.46	57.17
CDY42768	Canola	cytosol	63.78	56.8
KRH19104	Soybean	nucleus	43.05	43.35
KRH02776	Soybean	nucleus	43.05	43.35
KRH12329	Soybean	cytosol, nucleus	42.37	42.08
VIT_11s0052g00030.t01	Wine grape	plastid	44.42	41.85
KRH37335	Soybean	cytosol, nucleus	41.91	41.53
Solyc07g008490.2.1	Tomato	nucleus	39.86	36.31
TraesCS1D01G218700.1	Wheat	cytosol	36.22	35.33
TraesCS1B01G229900.1	Wheat	cytosol	35.99	35.19
Os10t0564000-01	Rice	cytosol	36.67	35.15
TraesCS1A01G216900.1	Wheat	cytosol	35.99	35.11
Zm00001d000030_P001	Maize	cytosol, extracellular, nucleus, plasma membrane	35.08	34.92
Zm00001d029973_P001	Maize	plasma membrane	35.54	34.82
EER94472	Sorghum	cytosol	35.31	34.29
HORVU1Hr1G055480.1	Barley	plastid	36.45	31.87
PGSC0003DMT400046406	Potato	cytosol	40.32	30.0
GSMUA_Achr8P14980_001	Banana	cytosol	38.27	30.0
GSMUA_Achr11P...	Banana	mitochondrion	38.27	29.32
Os02t0125500-00	Rice	cytosol	28.93	28.93
TraesCS6A01G084000.1	Wheat	cytosol	29.84	27.35
TraesCS6B01G113100.1	Wheat	cytosol	28.7	26.98
Zm00001d015093_P001	Maize	cytosol	28.7	26.92
HORVU6Hr1G014510.1	Barley	cytosol, mitochondrion, nucleus, plastid	29.84	26.46
KXG29352	Sorghum	cytosol	30.52	25.97
CDX99471	Canola	nucleus	12.07	24.65
CDY64706	Canola	nucleus	21.41	23.27
CDX74180	Canola	cytosol	28.93	22.56
CDY40663	Canola	cytosol	28.93	22.56
CDX69536	Canola	nucleus	18.45	15.23
CDY60930	Canola	nucleus	18.45	15.23
CDY03018	Canola	nucleus	15.49	14.53
CDX81615	Canola	cytosol	15.03	14.38
CDX70604	Canola	nucleus	18.91	14.31
CDY33769	Canola	nucleus	15.49	14.02
CDX78623	Canola	nucleus	19.13	14.0
CDY49107	Canola	nucleus	15.03	13.89
CDY39336	Canola	mitochondrion	14.58	13.53
CDY45180	Canola	cytosol	12.53	13.0
CDX78846	Canola	nucleus	16.63	12.72
CDX77643	Canola	nucleus	18.22	12.52
CDY33460	Canola	nucleus	18.22	12.48
CDY52947	Canola	plastid	15.03	11.46
CDY46555	Canola	plastid	15.03	11.36
CDX96185	Canola	nucleus	16.17	11.08
CDX89490	Canola	cytosol	15.26	10.82
CDY25609	Canola	cytosol	15.03	10.63
CDY13742	Canola	mitochondrion	15.03	10.54
CDY27030	Canola	nucleus	15.72	10.38
CDX84522	Canola	nucleus	17.31	10.26
CDY49453	Canola	nucleus	14.81	10.12
CDY56908	Canola	nucleus	14.58	10.06
CDX76904	Canola	mitochondrion, nucleus, peroxisome, plastid	14.35	9.98
CDY51849	Canola	cytosol	2.05	8.49
CDX99470	Canola	nucleus	4.78	7.75

Protein Annotations

Gene3D:3.30.1370.10	MapMan:35.1	GO:A0A078JF51	UniProt:A0A078JF51	EnsemblPlants:CDY65294	ProteinID:CDY65294
ProteinID:CDY65294.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00045547001
InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF132	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0004EE5E3B	SEG:seg

Description

BnaC01g41560DBnaC01g41560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JF51]

Coordinates

chrLK034722:-:458..2553

Molecular Weight (calculated)

47959.0 Da

IEP (calculated)

5.511

GRAVY (calculated)

-0.196

Length

439 amino acids

Sequence
(BLAST)

001: MSAVADSVKN GPLNLPENEN LRPSGVSATA FPNENSGAAE RWPGFPGDCV FRVIIPGHKV GAITGRQGEF IRKLWQETRA RIQVLDGPVK TPYRLVIISG
101: KEKPEAKMSP AMDAVVRVFR RVSSLPDNDD DDDDVQNAGS AFSSMRLLVP GMQASSLIGK QGSIIRSIVQ NSGASVRILS QDATPCYAAK DERIVAFHGE
201: ALKIVKALEA VVGHLRKYLV DHFVIPFFEE EYLARVFQED GALADNNPSL HAEPSNVTDS DSWLLARREA LVLEGKNRVE SRVQPSGVLF RQEDPIFSAI
301: EVRICYAYVS ELVCQTVRAP ICYSDDIIGA QGANINYIRW RSGAILIVEE SLNPGEMILV IKGTFSQVEI AYQLIQELVS TQKYPVSVSG GNARIDTGNV
401: PVHPPQLSSR QEPLSSSYMG TETEPNACSQ VTGPSPSRH

Best Arabidopsis Sequence Match ( AT4G26000.1 )
(BLAST)

001: MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL

Arabidopsis Description

PEPRNA-binding KH domain-containing protein PEPPER [Source:UniProtKB/Swiss-Prot;Acc:Q9SZH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.