Factsheet for PGSC0003DMT400046406

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g008490.2.1	Tomato	nucleus	78.81	96.47
KRH12329	Soybean	cytosol, nucleus	47.29	63.12
VIT_11s0052g00030.t01	Wine grape	plastid	49.49	62.66
KRH19104	Soybean	nucleus	46.1	62.39
KRH02776	Soybean	nucleus	46.1	62.39
KRH37335	Soybean	cytosol, nucleus	46.44	61.85
Zm00001d000030_P001	Maize	cytosol, extracellular, nucleus, plasma membrane	39.15	52.38
Zm00001d029973_P001	Maize	plasma membrane	39.32	51.79
Os10t0564000-01	Rice	cytosol	39.83	51.31
TraesCS1D01G218700.1	Wheat	cytosol	38.81	50.89
Bra019133.1-P	Field mustard	cytosol	34.24	50.75
TraesCS1A01G216900.1	Wheat	cytosol	38.64	50.67
EER94472	Sorghum	cytosol	38.81	50.66
TraesCS1B01G229900.1	Wheat	cytosol	38.47	50.56
AT4G26000.1	Thale cress	cytosol	41.19	49.09
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	38.98	47.92
CDY42768	Canola	cytosol	40.0	47.87
CDX92741	Canola	cytosol	39.83	47.67
PGSC0003DMT400076105	Potato	plastid	37.12	47.4
GSMUA_Achr8P14980_001	Banana	cytosol	44.58	46.96
PGSC0003DMT400038635	Potato	cytosol	11.53	46.58
HORVU1Hr1G055480.1	Barley	plastid	39.15	46.02
GSMUA_Achr11P...	Banana	mitochondrion	42.54	43.8
Bra013940.1-P	Field mustard	cytosol	29.83	41.41
CDX89376	Canola	cytosol	29.83	41.41
CDY65294	Canola	cytosol	30.0	40.32
Os02t0125500-00	Rice	cytosol	26.95	36.22
TraesCS6B01G113100.1	Wheat	cytosol	28.14	35.55
PGSC0003DMT400051262	Potato	nucleus	30.0	35.26
PGSC0003DMT400051668	Potato	cytosol	30.51	35.16
TraesCS6A01G084000.1	Wheat	cytosol	28.31	34.86
Zm00001d015093_P001	Maize	cytosol	26.44	33.33
HORVU6Hr1G014510.1	Barley	cytosol, mitochondrion, nucleus, plastid	27.63	32.93
KXG29352	Sorghum	cytosol	28.64	32.75
PGSC0003DMT400087680	Potato	plastid	8.64	20.48
PGSC0003DMT400066836	Potato	nucleus, plastid	14.41	19.1
PGSC0003DMT400047374	Potato	nucleus	16.44	18.2
PGSC0003DMT400003371	Potato	nucleus	16.1	17.56
PGSC0003DMT400064701	Potato	nucleus	16.1	17.12
PGSC0003DMT400041750	Potato	plastid	16.27	15.66
PGSC0003DMT400076798	Potato	nucleus	14.07	13.39
PGSC0003DMT400012623	Potato	nucleus, plastid	15.25	13.33
PGSC0003DMT400083772	Potato	plastid	14.24	13.06
PGSC0003DMT400047665	Potato	nucleus	12.03	10.35
PGSC0003DMT400074198	Potato	plastid	7.46	9.91

Protein Annotations

EntrezGene:102580072	Gene3D:3.30.1370.10	MapMan:35.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006396	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009299	GO:GO:0009628	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0048367
GO:GO:0048467	GO:GO:0048577	GO:GO:0048579	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sf	UniProt:M1BJ21	PFAM:PF00013	EnsemblPlantsGene:PGSC0003DMG400018010	PGSC:PGSC0003DMG400018010	EnsemblPlants:PGSC0003DMT400046406
PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF132	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI00029643DD
RefSeq:XP_006367746.1	SEG:seg	:	:	:	:

Description

Poly(RC)-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018010]

Coordinates

chr7:-:5545165..5551888

Molecular Weight (calculated)

62943.1 Da

IEP (calculated)

5.992

GRAVY (calculated)

-0.480

Length

590 amino acids

Sequence
(BLAST)

001: MASIEQIQNG SLVTHEFENS QVKPEEADAG SVKIAPEVSI EKPKWPGWPG SCVFRLIVPV LKVGSIIGRK GELVKKMCEE TGAKIRVLDG PPSSPDRVVL
101: ISGKEEPEAA LSPAMVAVIR VFKRVTGLSE GEDDVNLPGV AGAAFCSIRL LVASTQAVNL IGKQGSLIKP IQQNTGASIR VLSNDEMSIY ATSDERIVEI
201: QGEALKVLKA LESVIGHLRK FLVDQSVLPL FEKNYNTPSV QERETEPWSE RTMLNTSRPG LGDYPPRSGL GDYPPRSGLG DYPPRSGLGD YPPRSGLGDY
301: PPRSGLGDYP PRSGLGDYPP RSGLGDYPPR SGLGDYPPRS GLGDYPPRSG LGDYPPRSGL GDYPPRSGLG DYPPRSGLGD YPPRSGLGDY PPRSGLGDYP
401: PRSGLGDYPP PTKRDSLFPE RESQLDSHYH STGLSLYGQD LGLSGTRTSG VGRAGNSVIT QISQTVQMQI PLAYAEDIIG IGGANIAYIR RTSGAVLTVQ
501: ESRGLSDEIT VEIKGMSSQV QTAQQLIQEF MSSHKESLPS SYGQLDTGLR QSSYSNLGGG SYPSSSYGGH HYGGGYGSFG AGGGYSSYRS

Best Arabidopsis Sequence Match ( AT4G26000.1 )
(BLAST)

001: MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL

Arabidopsis Description

PEPRNA-binding KH domain-containing protein PEPPER [Source:UniProtKB/Swiss-Prot;Acc:Q9SZH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.