Factsheet for PGSC0003DMT400066836

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g090480.2.1	Tomato	nucleus	95.73	95.95
VIT_15s0021g01940.t01	Wine grape	nucleus	52.81	67.92
KRH00973	Soybean	nucleus, plastid	53.48	65.75
KRH40252	Soybean	cytosol, golgi, nucleus, plastid	53.71	61.6
PGSC0003DMT400038635	Potato	cytosol	7.42	22.6
PGSC0003DMT400087680	Potato	plastid	11.24	20.08
PGSC0003DMT400051262	Potato	nucleus	20.45	18.13
PGSC0003DMT400076105	Potato	plastid	18.2	17.53
PGSC0003DMT400051668	Potato	cytosol	19.55	16.99
PGSC0003DMT400047374	Potato	nucleus	19.1	15.95
PGSC0003DMT400064701	Potato	nucleus	19.55	15.68
PGSC0003DMT400003371	Potato	nucleus	18.65	15.34
PGSC0003DMT400046406	Potato	cytosol	19.1	14.41
PGSC0003DMT400076798	Potato	nucleus	19.33	13.87
PGSC0003DMT400083772	Potato	plastid	17.75	12.29
PGSC0003DMT400047665	Potato	nucleus	18.65	12.1
PGSC0003DMT400012623	Potato	nucleus, plastid	17.75	11.7
PGSC0003DMT400041750	Potato	plastid	15.73	11.42
PGSC0003DMT400074198	Potato	plastid	8.31	8.33

Protein Annotations

EnsemblPlants:PGSC0003DMT400066836	EnsemblPlantsGene:PGSC0003DMG400025983	Gene3D:3.30.1370.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PANTHER:PTHR10288
PANTHER:PTHR10288:SF159	PFAM:PF00013	PFscan:PS50084	PGSC:PGSC0003DMG400025983	SEG:seg	SMART:SM00322
SUPFAM:SSF54791	UniParc:UPI000294C981	UniProt:M1CGA4	MapMan:35.1	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400025983]

Coordinates

chr1:-:69720551..69725863

Molecular Weight (calculated)

47926.9 Da

IEP (calculated)

7.413

GRAVY (calculated)

-0.454

Length

445 amino acids

Sequence
(BLAST)

001: MANSQQIETS TNPNPNPPPP GSPPSAAAVI SRPSDEETNR SATAKRPREE YAAGTTDEAG LLGDDVPPLK KRVKVSQDVV YRIVVPSRQI GKVIGKAGHR
101: IQKIREETKA TIKVADAIAR HEERVIIISS KDNDDMFSDA ENALHQIVSL ILKDDGGNLD AQKVGAGHVA ANTVRFLIAG SQAGGLIGMS GQNIETLRNS
201: SGATITVLAQ HQLPLCASAH ESDRVVQLAG DIPAVLRAVV EIGCQLRDNP PKQVISISPT YNLGYSRAPQ PQVDPSSAEY VNLTMLVPES LAGGLIGRCG
301: SNISRIRAES GATIKVHGGK GEQKQRQVHL GGSAQQVALA KQRVDEYVYS QLMLQAGGEQ LQDTMQLQQQ SMQLQQSMQL QHSMQMQQQI SNTSATLMPG
401: YNHGHGVYMN SNQEAHMMTS YPQVYTSTNP QAPAYYGQSY PAPQM

Best Arabidopsis Sequence Match ( AT5G15270.1 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSGLSSHSST YRRRNYDY

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.