Factsheet for PGSC0003DMT400003371

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g088120.2.1	Tomato	nucleus	82.07	84.57
PGSC0003DMT400064701	Potato	nucleus	80.22	78.2
VIT_14s0108g01040.t01	Wine grape	nucleus	76.34	75.36
KRG93559	Soybean	nucleus	69.87	68.98
KRH18467	Soybean	nucleus	69.5	68.61
VIT_09s0002g00070.t01	Wine grape	mitochondrion	16.08	67.97
KRH40065	Soybean	nucleus	65.99	66.11
KRH01196	Soybean	nucleus	66.17	65.93
VIT_09s0002g00030.t01	Wine grape	cytosol, nucleus, plastid	27.91	63.98
AT5G15270.2	Thale cress	nucleus	60.44	59.67
PGSC0003DMT400047374	Potato	nucleus	58.41	59.29
CDY60930	Canola	nucleus	58.23	59.21
Bra008709.1-P	Field mustard	nucleus	55.82	58.41
CDX69536	Canola	nucleus	57.12	58.08
VIT_14s0006g00030.t01	Wine grape	cytosol	29.57	56.54
CDX70604	Canola	nucleus	59.52	55.52
CDX78623	Canola	nucleus	59.7	53.83
Bra006294.1-P	Field mustard	nucleus	59.52	53.67
KRH58152	Soybean	cytosol	12.57	53.54
PGSC0003DMT400087680	Potato	plastid	14.6	31.73
PGSC0003DMT400076798	Potato	nucleus	29.57	25.81
PGSC0003DMT400038635	Potato	cytosol	6.84	25.34
PGSC0003DMT400012623	Potato	nucleus, plastid	31.42	25.19
PGSC0003DMT400041750	Potato	plastid	24.95	22.02
PGSC0003DMT400083772	Potato	plastid	25.51	21.46
PGSC0003DMT400074198	Potato	plastid	17.56	21.4
PGSC0003DMT400047665	Potato	nucleus	26.8	21.14
PGSC0003DMT400051668	Potato	cytosol	19.04	20.12
PGSC0003DMT400051262	Potato	nucleus	18.48	19.92
PGSC0003DMT400076105	Potato	plastid	16.27	19.05
PGSC0003DMT400066836	Potato	nucleus, plastid	15.34	18.65
PGSC0003DMT400046406	Potato	cytosol	17.56	16.1

Protein Annotations

EntrezGene:102579670	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
UniProt:M0ZLJ0	PFAM:PF00013	EnsemblPlantsGene:PGSC0003DMG400001335	PGSC:PGSC0003DMG400001335	EnsemblPlants:PGSC0003DMT400003371	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF151	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI000294A4FE	RefSeq:XP_006338439.1
SEG:seg	:	:	:	:	:

Description

KH domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001335]

Coordinates

chr2:-:46102537..46108946

Molecular Weight (calculated)

58130.6 Da

IEP (calculated)

7.857

GRAVY (calculated)

-0.390

Length

541 amino acids

Sequence
(BLAST)

001: MAGQRNSYGK RSHSQSDYAD NGRNKRRNTG SDKDLFSIGP DDTVYRYLCA GKKIGSIIGR GGEIVKQLRV DTKSKIRIGE TVPDCEERVV TIYSASEETN
101: NFDGSENCIC PAQDALFKVH EKIVSETIDE DSENAPQVTI RLLVPSDQIG CVIGKGGQIV QNIRSESGAQ IRILKDNHLP ACALSSDELL QISGEATVVK
201: KALYEIATRL HKNPSRSQNL LASAAPNIYS SSSLVGHTAG APIVGMASLM GSYRGYKGES GDLSRSFYSA PRNESSSKEF SICLLCPTAN IGGVIGKGGV
301: IINQIRQESG AAIKVDSFAA EGDDCVISIS VKEFFEDTYS PTVEAALRLQ PRCSEKVDKD SGLTPLTTRL LVPTSRIGCL IGKGGTIINE MRKITKANIR
401: ILSKEGLPKV AAEDDEMVQI SGELDVVKDA LIQVTSRLRA NLFEREGAAS AFVPVLPYLP MTTGSDTLKH ESRDSRRHGH SYSAGYGGTT DLPRADGYGS
501: YSGIQSSSIG YGAYEGYSLG RSGGSRSSGQ DPASRRKSYG Y

Best Arabidopsis Sequence Match ( AT5G15270.3 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.