Factsheet for VIT_09s0002g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g00070.t01	Wine grape	mitochondrion	44.49	82.03
VIT_14s0006g00030.t01	Wine grape	cytosol	61.02	50.88
KRH58152	Soybean	cytosol	22.03	40.94
VIT_14s0108g01040.t01	Wine grape	nucleus	79.66	34.31
PGSC0003DMT400003371	Potato	nucleus	63.98	27.91
KRG93559	Soybean	nucleus	63.56	27.37
PGSC0003DMT400064701	Potato	nucleus	63.56	27.03
KRH18467	Soybean	nucleus	62.71	27.01
KRH40065	Soybean	nucleus	59.32	25.93
KRH01196	Soybean	nucleus	59.32	25.78
VIT_01s0026g02650.t01	Wine grape	nucleus	62.29	25.7
Solyc02g088120.2.1	Tomato	nucleus	56.78	25.52
Solyc02g067210.2.1	Tomato	nucleus	63.14	24.19
AT5G15270.2	Thale cress	nucleus	53.39	22.99
Bra008709.1-P	Field mustard	nucleus	47.03	21.47
CDX70604	Canola	nucleus	52.12	21.21
CDY60930	Canola	nucleus	47.46	21.05
CDX69536	Canola	nucleus	47.03	20.86
Bra006294.1-P	Field mustard	nucleus	51.69	20.33
CDX78623	Canola	nucleus	51.27	20.17
VIT_15s0021g01940.t01	Wine grape	nucleus	21.61	14.74
VIT_07s0141g00800.t01	Wine grape	cytosol	23.73	12.93
VIT_14s0006g02960.t01	Wine grape	nucleus, plastid	31.36	10.95
VIT_14s0081g00440.t01	Wine grape	cytosol	23.31	10.76
VIT_09s0054g00450.t01	Wine grape	plastid	31.78	10.65
VIT_11s0052g00030.t01	Wine grape	plastid	20.34	10.3
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	26.27	9.95
VIT_03s0038g00420.t01	Wine grape	plastid	26.69	9.72
VIT_18s0001g08280.t01	Wine grape	cytosol	28.81	9.7
VIT_16s0098g01660.t01	Wine grape	nucleus	25.0	8.93

Protein Annotations

Gene3D:3.30.310.210	MapMan:35.1	ProteinID:CCB59229	ProteinID:CCB59229.1	UniProt:F6HXJ9	EMBL:FN596494
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom
InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF151
SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0002109C93	ArrayExpress:VIT_09s0002g00030	EnsemblPlantsGene:VIT_09s0002g00030	EnsemblPlants:VIT_09s0002g00030.t01

Description

No Description!

Coordinates

chr9:+:34807..35816

Molecular Weight (calculated)

25905.9 Da

IEP (calculated)

6.795

GRAVY (calculated)

-0.180

Length

236 amino acids

Sequence
(BLAST)

001: MASQRNIFGK RAIPNLIMVI MERGWEIVKQ PRVDTKPKIS IGDTVSGCEE HVVTIYNFSI ESNVFDNSNT FVSPTQNVLF RVHDRVVSDE VHDENFEEAS
101: QVIVQFLVPS DQIGCVIGKG GQIIQSIRSE SGAQIRILKD DHLPSRVLSS DKLIQISGEP SLVMKALYQI ASRLHDNPSR SQHLLVSTMP TRYSSGGSLM
201: GPTSSAPIMG LAPLVGTYGG YRGDSGDWSR SLYSAP

Best Arabidopsis Sequence Match ( AT5G15270.1 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSGLSSHSST YRRRNYDY

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.