CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18467	Soybean	nucleus	96.72	96.72
KRH01196	Soybean	nucleus	78.47	79.19
KRH40065	Soybean	nucleus	77.74	78.89
VIT_14s0108g01040.t01	Wine grape	nucleus	78.47	78.47
PGSC0003DMT400003371	Potato	nucleus	68.98	69.87
VIT_09s0002g00070.t01	Wine grape	mitochondrion	16.06	68.75
PGSC0003DMT400064701	Potato	nucleus	69.16	68.29
VIT_09s0002g00030.t01	Wine grape	cytosol, nucleus, plastid	27.37	63.56
AT5G15270.2	Thale cress	nucleus	63.32	63.32
CDY60930	Canola	nucleus	61.13	62.97
Solyc02g088120.2.1	Tomato	nucleus	59.67	62.29
Bra008709.1-P	Field mustard	nucleus	58.58	62.09
CDX69536	Canola	nucleus	59.85	61.65
Solyc02g067210.2.1	Tomato	nucleus	68.61	61.04
CDX70604	Canola	nucleus	62.41	58.97
CDX78623	Canola	nucleus	62.23	56.83
KRH58152	Soybean	cytosol	13.14	56.69
VIT_14s0006g00030.t01	Wine grape	cytosol	29.2	56.54
Bra006294.1-P	Field mustard	nucleus	61.86	56.5
KRH58669	Soybean	endoplasmic reticulum, nucleus	32.48	28.66
KRH42565	Soybean	nucleus	32.3	28.32
KRH42077	Soybean	plastid	29.01	27.09
KRH49838	Soybean	plastid	28.47	26.44
KRH47290	Soybean	mitochondrion, nucleus	26.82	26.3
KRH44614	Soybean	mitochondrion, nucleus	27.01	26.19
KRH52837	Soybean	plastid	30.84	25.0
KRH00973	Soybean	nucleus, plastid	16.42	24.86
KRH62129	Soybean	plastid	30.29	24.48
KRH21739	Soybean	plastid	31.57	24.2
KRH53532	Soybean	nucleus	27.74	23.49
KRH40252	Soybean	cytosol, golgi, nucleus, plastid	16.61	23.45
KRG97000	Soybean	nucleus	18.98	23.32
KRH64403	Soybean	nucleus	27.37	23.29
KRH68752	Soybean	cytoskeleton, cytosol, nucleus	18.8	23.25
KRH39475	Soybean	plastid	25.73	23.08
KRH74462	Soybean	nucleus	25.91	23.05
KRH19104	Soybean	nucleus	18.25	22.94
KRH02776	Soybean	nucleus	18.07	22.71
KRH10613	Soybean	plastid	29.56	22.28
KRH37335	Soybean	cytosol, nucleus	16.97	20.99
KRH12329	Soybean	cytosol, nucleus	16.79	20.81
KRH71306	Soybean	nucleus	17.7	19.6
KRH67322	Soybean	nucleus	18.61	19.28
KRG95633	Soybean	nucleus	18.43	18.81
KRH32136	Soybean	cytosol	19.34	18.76

Protein Annotations

EntrezGene:100804157	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	EMBL:ACUP02011591	EnsemblPlantsGene:GLYMA_19G024400
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1N665	InterPro:IPR036612
InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	ProteinID:KRG93557.1	ProteinID:KRG93558.1	EnsemblPlants:KRG93559
ProteinID:KRG93559	ProteinID:KRG93559.1	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF151
SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI000233E322	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr19:+:2831533..2837777

Molecular Weight (calculated)

58290.6 Da

IEP (calculated)

6.786

GRAVY (calculated)

-0.377

Length

548 amino acids

Sequence
(BLAST)

001: MGGQRSGYGK RPHSQSDHDN GPNKRRNHGD DREQFVIDLE DTVYRYVCPG RKIGSVIGRG GEIVKQLRVE TKAKIRIGET VPGCEERVVT IYSPSDETNA
101: VEGGGNYVSP AQDALFKVHD RVVAEDFHGD QDDDGGQQVT AKLLVPSDQI GCVIGKGGSI VQNIRSETGA QIRILKDDHL PLCALSSDEL VQITGDASVV
201: KKALCQIASR LHDNPSRSQH LLTSAVPGVY PAGGSLIGPG AGAPIVGIAP LVGAYGGYKG DTGDWPPRSM YSAPRDEAST KEFSVRLVCP TGNIGGVIGK
301: GGMIINQIRQ ESGATIKVDS STTEGDECLI AISTKEFFEE TFSPTIEAAV RLQPRCSEKV ERDSGIISFT TRLLVPTSRI GCLIGKGGSI ITEMRRLTKA
401: NIRIISKENL PKIASEDDEM VQISGDLDIA KDALVHVLTR LRANLFDREG ALSSFLPVLP YLPVSADGSD GLNYDGRDGK RHGRGHSYSS GYGGSSDLAA
501: GDIYGSYGGS QLGSNSAYGA YGSYSLGRSS TAGLSSQSGA SRRRNHAY

Best Arabidopsis Sequence Match ( AT5G15270.1 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSGLSSHSST YRRRNYDY

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.