CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58669	Soybean	endoplasmic reticulum, nucleus	93.6	94.2
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	76.96	77.21
PGSC0003DMT400076798	Potato	nucleus	70.4	70.97
Solyc08g048500.2.1	Tomato	nucleus	69.28	70.18
CDX99470	Canola	nucleus	25.76	59.41
CDX77643	Canola	nucleus	58.88	57.59
CDY33460	Canola	nucleus	59.04	57.57
Bra025032.1-P	Field mustard	nucleus	59.36	57.43
GSMUA_Achr6P03670_001	Banana	cytosol, nucleus, plastid	58.08	55.76
AT4G18375.2	Thale cress	nucleus	53.92	55.61
GSMUA_Achr9P18150_001	Banana	endoplasmic reticulum, golgi	59.52	53.84
AT5G46190.2	Thale cress	cytosol	59.04	53.56
CDX78846	Canola	nucleus	49.12	53.48
OQU80050	Sorghum	nucleus	53.76	53.42
Bra013302.1-P	Field mustard	nucleus	49.92	53.24
Zm00001d024270_P001	Maize	nucleus	52.48	51.9
TraesCS3B01G580700.1	Wheat	nucleus	51.68	51.19
HORVU5Hr1G121900.1	Barley	nucleus	51.52	50.95
TraesCS3D01G519700.1	Wheat	nucleus	51.36	50.87
TraesCS5B01G551800.1	Wheat	nucleus	51.2	50.71
TraesCS3A01G512500.1	Wheat	nucleus	51.2	50.71
Zm00001d049390_P001	Maize	nucleus	51.2	50.71
TraesCS4A01G333900.1	Wheat	nucleus	51.2	50.63
TraesCS5D01G538200.3	Wheat	nucleus	50.56	50.16
HORVU0Hr1G007380.3	Barley	mitochondrion, nucleus	50.56	50.0
CDX99471	Canola	nucleus	16.32	47.44
KRG93559	Soybean	nucleus	28.32	32.3
KRH18467	Soybean	nucleus	28.0	31.93
KRH40065	Soybean	nucleus	27.04	31.3
KRH01196	Soybean	nucleus	26.88	30.94
KRH58152	Soybean	cytosol	5.92	29.13
KRH42077	Soybean	plastid	25.44	27.09
KRH49838	Soybean	plastid	25.28	26.78
KRH62129	Soybean	plastid	28.64	26.4
KRH52837	Soybean	plastid	28.48	26.33
KRH64403	Soybean	nucleus	26.08	25.31
KRH53532	Soybean	nucleus	25.92	25.04
KRH44614	Soybean	mitochondrion, nucleus	22.56	24.96
KRH47290	Soybean	mitochondrion, nucleus	22.08	24.69
KRH21739	Soybean	plastid	27.68	24.2
KRH39475	Soybean	plastid	22.4	22.91
KRH00973	Soybean	nucleus, plastid	12.96	22.38
KRH10613	Soybean	plastid	25.12	21.6
KRH12329	Soybean	cytosol, nucleus	15.2	21.49
KRH68752	Soybean	cytoskeleton, cytosol, nucleus	15.04	21.22
KRH37335	Soybean	cytosol, nucleus	14.88	20.99
KRH40252	Soybean	cytosol, golgi, nucleus, plastid	12.96	20.88
KRH02776	Soybean	nucleus	14.56	20.87
KRH19104	Soybean	nucleus	14.4	20.64
KRG97000	Soybean	nucleus	14.72	20.63
KRH74462	Soybean	nucleus	19.68	19.97
KRH67322	Soybean	nucleus	15.04	17.77
KRG95633	Soybean	nucleus	15.04	17.5
KRH71306	Soybean	nucleus	13.44	16.97
KRH32136	Soybean	cytosol	14.88	16.46

Protein Annotations

EntrezGene:100801062	Gene3D:3.30.1370.10	MapMan:35.1	UniProt:A0A0R0IQI3	EMBL:ACUP02004815	EMBL:ACUP02004816
EnsemblPlantsGene:GLYMA_08G097700	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612
InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EnsemblPlants:KRH42565	ProteinID:KRH42565	ProteinID:KRH42565.1
PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF137	SMART:SM00322	SUPFAM:SSF54791
UniParc:UPI0006EDD93B	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:7467538..7475207

Molecular Weight (calculated)

66760.1 Da

IEP (calculated)

6.977

GRAVY (calculated)

-0.235

Length

625 amino acids

Sequence
(BLAST)

001: MGETGKRYHS QRDHDGDRKH QKRRMTDRDD RGNDELIVYR ILCPDEVIGS VIGKNGKVIN SIRQETRAKV KVVDPFPGSK DRVITIYCYV KEKEDVEIDD
101: EFAGKEPLCA AQDALLKVHV AIANSIAAIG DSEKKRKDRD ECQILVPSSQ SANIIGKAGA TIKKLRSKTR ANIKVTAKDA ADPTHSCAME FDNFVVITGE
201: SEAVKRALFA VSSIMYKFGP REDISLDTAV PEAPPSIIIP SDVPVYPPGG LYPASDPIVT PRAVPQIIGA TNVPDLQGYA DAGNSWPMYS SALPVVSGVG
301: ASRSEELIIR MLCPSDKIGR VIGKGGSTIK SMRQASGAHI EVDDSKANFD ECLIIITTTE SPSDLKSMAV EAVLLMQGKI NDEDDTTVSI RLLVPSKVIG
401: CIIGKSGSII NEIRKRTKAD VRISKGDKPK CADANDELVE VGGSVDCVRD ALIQIILRLR DDVLRERDTG HNPSIGAESL YPGSAGLSLP SMMHSVPPVA
501: APMVNDHRAE SGAGLGMLSP SSPYGGYGSL PMGDNGYGSM SSYATKLYGG LPPPSTLDML IPANAVGKVL GKGGANIANI RKISGASIEI SDNKSARGDR
601: IALISGTPEQ KRAAENLIQA FIMAT

Best Arabidopsis Sequence Match ( AT5G46190.3 )
(BLAST)

001: MVERGKRTHN RFRDNNNDNN RNQRRRLSYE SEEKKIDNKD DLVVVYRILC PSGVMGSVIG KSGKVINLIR QETRARIKVV DPFPGCSERV ITIFCSVSEK
101: KDIVDIEYSE LDYSVPLCSA QAALLKVHDA IVASLATAAE NTKIDRDDFR ECRLLVPSSQ CSIVIGKSGS IIKNIRGRTR ANVKVVSKDV SDPSHTCAMD
201: FDNIVMISGE TESVKKALFA VSAIMYKVSP REQIPLDTTV QEVPASIIIP SDLSIYPQAG LYPSQDSIFQ HGANVSSFIG TLPQGYGENA ANPVPVFSAS
301: ALPVVHGFGG SSRSEKLAIK VICSSSKIGR VIGKGGLTIK GIRQASGSHI EVNDSRTNHD DDCVITVTAT ESPDDLKSMA VEAVLLLQEK INDEDEDKVK
401: MQLLVSSKVI GCIIGKSGSI ISEIRKRTKA DIHISKGNNT PKCADPNDEL VEISGEVSNV RDALIQIVLR LRDDVLRDRE TGSRNQPPAR SENNNFFSSS
501: SSNTGLALPQ SFMSSVPQVA SVDFNRRPET GSSMSMLPSS GGIYGYGSFP VGNTSYGSNS SYSSNLYGGL PQSTTMEVRI PANAVGKVMG RGGGNLDNIR
601: RISGAMIEIS DSKNSHGGRV ALISGTSEQK RTAENLFQAF IMST

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:TAIR;Acc:AT5G46190]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.