Factsheet for Zm00001d049390_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU80050	Sorghum	nucleus	91.13	91.41
Zm00001d024270_P001	Maize	nucleus	89.54	89.4
HORVU0Hr1G007380.3	Barley	mitochondrion, nucleus	70.36	70.25
TraesCS3D01G519700.1	Wheat	nucleus	70.05	70.05
TraesCS3B01G580700.1	Wheat	nucleus	70.05	70.05
TraesCS3A01G512500.1	Wheat	nucleus	69.73	69.73
TraesCS4A01G333900.1	Wheat	nucleus	69.73	69.62
TraesCS5D01G538200.3	Wheat	nucleus	69.26	69.37
HORVU5Hr1G121900.1	Barley	nucleus	69.1	68.99
TraesCS5B01G551800.1	Wheat	nucleus	68.78	68.78
GSMUA_Achr6P03670_001	Banana	cytosol, nucleus, plastid	54.52	52.84
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	51.03	51.69
PGSC0003DMT400076798	Potato	nucleus	50.55	51.45
KRH42565	Soybean	nucleus	50.71	51.2
Solyc08g048500.2.1	Tomato	nucleus	49.6	50.73
KRH58669	Soybean	endoplasmic reticulum, nucleus	49.92	50.72
GSMUA_Achr9P18150_001	Banana	endoplasmic reticulum, golgi	54.99	50.22
CDX99470	Canola	nucleus	20.44	47.6
CDX78846	Canola	nucleus	40.73	44.77
CDX99471	Canola	nucleus	15.21	44.65
CDY33460	Canola	nucleus	45.17	44.46
Bra025032.1-P	Field mustard	nucleus	45.17	44.12
Bra013302.1-P	Field mustard	nucleus	40.89	44.03
CDX77643	Canola	nucleus	44.53	43.98
AT4G18375.2	Thale cress	nucleus	41.52	43.23
AT5G46190.2	Thale cress	cytosol	44.69	40.93
Zm00001d029328_P002	Maize	nucleus	23.61	27.54
Zm00001d009014_P004	Maize	nucleus	23.77	21.28
Zm00001d006055_P002	Maize	plastid	20.76	20.99
Zm00001d013963_P002	Maize	nucleus	26.78	20.71
Zm00001d046033_P001	Maize	nucleus	21.55	20.39
Zm00001d000030_P001	Maize	cytosol, extracellular, nucleus, plasma membrane	13.95	19.95
Zm00001d029973_P001	Maize	plasma membrane	13.95	19.64
Zm00001d019538_P002	Maize	plastid	20.44	19.11
Zm00001d037055_P003	Maize	nucleus	21.55	18.38
Zm00001d030968_P006	Maize	extracellular	14.26	17.72
Zm00001d032597_P006	Maize	golgi, plasma membrane	27.42	17.55
Zm00001d003290_P002	Maize	mitochondrion	6.18	17.03
Zm00001d015093_P001	Maize	cytosol	11.89	16.03
Zm00001d013712_P003	Maize	cytosol, plastid, vacuole	14.1	13.55
Zm00001d010815_P001	Maize	mitochondrion	6.97	12.57
Zm00001d014180_P004	Maize	cytosol	12.04	11.75

Protein Annotations

EnsemblPlants:Zm00001d049390_P001	EnsemblPlants:Zm00001d049390_T001	EnsemblPlantsGene:Zm00001d049390	Gene3D:3.30.1370.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
PANTHER:PTHR10288	PANTHER:PTHR10288:SF137	PFAM:PF00013	PFscan:PS50084	ProteinID:AQK50239.1	SEG:seg
SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI000842A4B8	UniProt:A0A1D6PUD8	MapMan:35.1	:

Description

RNA-binding KH domain-containing protein

Coordinates

chr4:-:28761618..28769947

Molecular Weight (calculated)

69139.3 Da

IEP (calculated)

7.654

GRAVY (calculated)

-0.400

Length

631 amino acids

Sequence
(BLAST)

001: MRQQTGKRPR QHREYEREEK KDQHKRPFPN AHESSNNDGL VLYRILCPDS LIGSVIGKNG NVINAIRQQT SAKVMVVDPY PGADKRVILV YCYVKHRDLD
101: AVGNDNEPVC AAQDALLRVH NAIVDALHKV HKNRRDSDNK DTEEANILVP ASQTSNIIGK SGAVIKHLRS TSRAFVKVTP KDPSDATHSC AMSFDNFVQI
201: TGGAEAVKKA LFGVSTIIYK HPSKEGIPLE TSIPEPTPSI IIPSELPVYP ASNFYSAPDD AIPSVHPSLS ILGSTRHLSE LDLPANDHGR LPIYQSILPV
301: IPTYSAPKCS GELEFRVLCP GDKIGLVIGR GGATIKNIRQ ESGARIDVDD AKNGKEESII TITSTEVIND VKSAAVEAVL LLQAKINDYE DDRMNLRLVP
401: NKVIGCLIGR AGSIVNDMRK KTKANILISK GNKPWRASSS DELVEVSGEA DKLRDALVQI ILRLREDVLK ESVESQNSDK DGKLTTAISD SLYGNNLSFP
501: ALLPQNPQIV SLGYDRRGES ERALEVFPCT SSYGYSSMKV TDDGYGGLPS YTSKAYEEHL PRVEMTVPAS GLSKVMGKHG TNLENIRKIS GAHIEIIESK
601: SSRHEHVAYI TGTSEQRQSA ENLIKAFIMS T

Best Arabidopsis Sequence Match ( AT5G46190.3 )
(BLAST)

001: MVERGKRTHN RFRDNNNDNN RNQRRRLSYE SEEKKIDNKD DLVVVYRILC PSGVMGSVIG KSGKVINLIR QETRARIKVV DPFPGCSERV ITIFCSVSEK
101: KDIVDIEYSE LDYSVPLCSA QAALLKVHDA IVASLATAAE NTKIDRDDFR ECRLLVPSSQ CSIVIGKSGS IIKNIRGRTR ANVKVVSKDV SDPSHTCAMD
201: FDNIVMISGE TESVKKALFA VSAIMYKVSP REQIPLDTTV QEVPASIIIP SDLSIYPQAG LYPSQDSIFQ HGANVSSFIG TLPQGYGENA ANPVPVFSAS
301: ALPVVHGFGG SSRSEKLAIK VICSSSKIGR VIGKGGLTIK GIRQASGSHI EVNDSRTNHD DDCVITVTAT ESPDDLKSMA VEAVLLLQEK INDEDEDKVK
401: MQLLVSSKVI GCIIGKSGSI ISEIRKRTKA DIHISKGNNT PKCADPNDEL VEISGEVSNV RDALIQIVLR LRDDVLRDRE TGSRNQPPAR SENNNFFSSS
501: SSNTGLALPQ SFMSSVPQVA SVDFNRRPET GSSMSMLPSS GGIYGYGSFP VGNTSYGSNS SYSSNLYGGL PQSTTMEVRI PANAVGKVMG RGGGNLDNIR
601: RISGAMIEIS DSKNSHGGRV ALISGTSEQK RTAENLFQAF IMST

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:TAIR;Acc:AT5G46190]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.