CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42565	Soybean	nucleus	94.2	93.6
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	75.68	75.44
Solyc08g048500.2.1	Tomato	nucleus	68.6	69.04
PGSC0003DMT400076798	Potato	nucleus	68.92	69.03
CDX99470	Canola	nucleus	25.76	59.04
CDX77643	Canola	nucleus	58.13	56.49
CDY33460	Canola	nucleus	58.13	56.32
Bra025032.1-P	Field mustard	nucleus	58.45	56.19
GSMUA_Achr6P03670_001	Banana	cytosol, nucleus, plastid	57.97	55.3
AT4G18375.2	Thale cress	nucleus	52.82	54.13
GSMUA_Achr9P18150_001	Banana	endoplasmic reticulum, golgi	59.26	53.26
CDX78846	Canola	nucleus	48.95	52.96
Bra013302.1-P	Field mustard	nucleus	49.76	52.73
OQU80050	Sorghum	nucleus	53.3	52.62
AT5G46190.2	Thale cress	cytosol	58.13	52.39
Zm00001d024270_P001	Maize	nucleus	51.85	50.95
TraesCS3B01G580700.1	Wheat	nucleus	50.89	50.08
Zm00001d049390_P001	Maize	nucleus	50.72	49.92
HORVU5Hr1G121900.1	Barley	nucleus	50.72	49.84
TraesCS5B01G551800.1	Wheat	nucleus	50.56	49.76
TraesCS3D01G519700.1	Wheat	nucleus	50.56	49.76
TraesCS4A01G333900.1	Wheat	nucleus	50.56	49.68
TraesCS3A01G512500.1	Wheat	nucleus	50.4	49.6
TraesCS5D01G538200.3	Wheat	nucleus	49.92	49.21
HORVU0Hr1G007380.3	Barley	mitochondrion, nucleus	49.76	48.89
CDX99471	Canola	nucleus	16.59	47.91
KRG93559	Soybean	nucleus	28.66	32.48
KRH18467	Soybean	nucleus	28.34	32.12
KRH40065	Soybean	nucleus	27.05	31.11
KRH01196	Soybean	nucleus	26.89	30.76
KRH58152	Soybean	cytosol	6.28	30.71
KRH42077	Soybean	plastid	25.44	26.92
KRH49838	Soybean	plastid	25.12	26.44
KRH62129	Soybean	plastid	28.66	26.25
KRH52837	Soybean	plastid	28.5	26.18
KRH64403	Soybean	nucleus	26.09	25.16
KRH53532	Soybean	nucleus	25.93	24.88
KRH44614	Soybean	mitochondrion, nucleus	22.54	24.78
KRH47290	Soybean	mitochondrion, nucleus	22.06	24.51
KRH21739	Soybean	plastid	27.38	23.78
KRH39475	Soybean	plastid	23.03	23.4
KRH00973	Soybean	nucleus, plastid	13.2	22.65
KRH68752	Soybean	cytoskeleton, cytosol, nucleus	15.46	21.67
KRH10613	Soybean	plastid	24.96	21.32
KRH40252	Soybean	cytosol, golgi, nucleus, plastid	13.2	21.13
KRG97000	Soybean	nucleus	15.14	21.08
KRH12329	Soybean	cytosol, nucleus	14.65	20.59
KRH37335	Soybean	cytosol, nucleus	14.49	20.32
KRH74462	Soybean	nucleus	20.13	20.29
KRH02776	Soybean	nucleus	14.17	20.18
KRH19104	Soybean	nucleus	14.17	20.18
KRH67322	Soybean	nucleus	15.46	18.15
KRG95633	Soybean	nucleus	15.46	17.88
KRH71306	Soybean	nucleus	13.85	17.37
KRH32136	Soybean	cytosol	15.46	16.99

Protein Annotations

Gene3D:3.30.1370.10	MapMan:35.1	EMBL:ACUP02003280	EnsemblPlantsGene:GLYMA_05G141800	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	UniProt:I1K3G0	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sf	EnsemblPlants:KRH58669	ProteinID:KRH58669	ProteinID:KRH58669.1	PFAM:PF00013	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF137	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI00023C478B	SEG:seg

Description

hypothetical protein

Coordinates

chr5:+:33508921..33514129

Molecular Weight (calculated)

66500.9 Da

IEP (calculated)

7.378

GRAVY (calculated)

-0.223

Length

621 amino acids

Sequence
(BLAST)

001: MGETGKRYRS QRDHDGDRKN QKRQMTDRDD RGNDELIVYR ILCPDEVIGS VIGKNGKVIN SIRQETRAKV KIVDPFPGAK DRVITIYSYV KEKEGVEIDD
101: EFAGKEPLCA AQDALLKVHV AIVNSIAALG DSGKKRKDRD ECQILVPSSQ SANIIGKAGA TIKKLRSKTR ANIKVTAKDA ADPTHTCAME FDNFVLITGE
201: SEAVKRALFA VSSIMYKFGP REDISLDTAV PEAPPRIIIP SIPSDVPVYP PGGLYPASDP IVTPRAVPQI IGTTNVPDLQ GYADAENSWP LYTSALPVVS
301: GVGASRSEEL IVRMLCPSDK IGRVIGKGGS TIKSMRQASG ARIEVDDSKA NYDECLIIIT TTESPSDLKS MAVEAVLLMQ GKINDEDDTT VSIRLLVPSK
401: VIGCIIGKSG SIINEIRKRT KADVRISKGD KPKCANANDE LVEVGGSVDC VSDALIQIIL RLRDDVLRER DTSHNPSIGS AGLSLPSMMH SVPPVAAPMP
501: YDHRAESGAG LGMLSSSSLY GGYGSLSMEE NGYGSLSLYA TQLYGGLPPP STLDMLIPAN AVGKVLGKGG ANIANIRKIS GASIEISDNK SARGDRIALI
601: SGTPEQKRAA ENLIQAFIMA T

Best Arabidopsis Sequence Match ( AT5G46190.3 )
(BLAST)

001: MVERGKRTHN RFRDNNNDNN RNQRRRLSYE SEEKKIDNKD DLVVVYRILC PSGVMGSVIG KSGKVINLIR QETRARIKVV DPFPGCSERV ITIFCSVSEK
101: KDIVDIEYSE LDYSVPLCSA QAALLKVHDA IVASLATAAE NTKIDRDDFR ECRLLVPSSQ CSIVIGKSGS IIKNIRGRTR ANVKVVSKDV SDPSHTCAMD
201: FDNIVMISGE TESVKKALFA VSAIMYKVSP REQIPLDTTV QEVPASIIIP SDLSIYPQAG LYPSQDSIFQ HGANVSSFIG TLPQGYGENA ANPVPVFSAS
301: ALPVVHGFGG SSRSEKLAIK VICSSSKIGR VIGKGGLTIK GIRQASGSHI EVNDSRTNHD DDCVITVTAT ESPDDLKSMA VEAVLLLQEK INDEDEDKVK
401: MQLLVSSKVI GCIIGKSGSI ISEIRKRTKA DIHISKGNNT PKCADPNDEL VEISGEVSNV RDALIQIVLR LRDDVLRDRE TGSRNQPPAR SENNNFFSSS
501: SSNTGLALPQ SFMSSVPQVA SVDFNRRPET GSSMSMLPSS GGIYGYGSFP VGNTSYGSNS SYSSNLYGGL PQSTTMEVRI PANAVGKVMG RGGGNLDNIR
601: RISGAMIEIS DSKNSHGGRV ALISGTSEQK RTAENLFQAF IMST

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:TAIR;Acc:AT5G46190]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.