CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40252	Soybean	cytosol, golgi, nucleus, plastid	97.51	90.98
VIT_15s0021g01940.t01	Wine grape	nucleus	70.72	73.99
Solyc01g090480.2.1	Tomato	nucleus	65.75	53.6
PGSC0003DMT400066836	Potato	nucleus, plastid	65.75	53.48
KRH58152	Soybean	cytosol	9.39	26.77
KRH02776	Soybean	nucleus	24.59	20.41
KRH19104	Soybean	nucleus	24.31	20.18
KRH68752	Soybean	cytoskeleton, cytosol, nucleus	22.1	18.06
KRH12329	Soybean	cytosol, nucleus	21.55	17.65
KRH37335	Soybean	cytosol, nucleus	21.27	17.38
KRG97000	Soybean	nucleus	21.27	17.26
KRH40065	Soybean	nucleus	25.69	17.22
KRH71306	Soybean	nucleus	23.2	16.97
KRH01196	Soybean	nucleus	25.41	16.94
KRH67322	Soybean	nucleus	24.31	16.64
KRG93559	Soybean	nucleus	24.86	16.42
KRG95633	Soybean	nucleus	24.31	16.39
KRH18467	Soybean	nucleus	24.59	16.24
KRH32136	Soybean	cytosol	22.65	14.51
KRH49838	Soybean	plastid	22.65	13.9
KRH52837	Soybean	plastid	25.69	13.76
KRH42077	Soybean	plastid	21.55	13.29
KRH58669	Soybean	endoplasmic reticulum, nucleus	22.65	13.2
KRH42565	Soybean	nucleus	22.38	12.96
KRH62129	Soybean	plastid	24.03	12.83
KRH53532	Soybean	nucleus	22.93	12.83
KRH44614	Soybean	mitochondrion, nucleus	19.89	12.74
KRH64403	Soybean	nucleus	22.1	12.42
KRH47290	Soybean	mitochondrion, nucleus	19.06	12.34
KRH39475	Soybean	plastid	19.61	11.62
KRH21739	Soybean	plastid	22.65	11.47
KRH74462	Soybean	nucleus	19.34	11.36
KRH10613	Soybean	plastid	20.72	10.32

Protein Annotations

EntrezGene:100799689	Gene3D:3.30.1370.10	MapMan:35.2	EMBL:ACUP02011485	EnsemblPlantsGene:GLYMA_18G245600	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	UniProt:K7MUI8	InterPro:KH_dom
InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EnsemblPlants:KRH00973	ProteinID:KRH00973	ProteinID:KRH00973.1	PFAM:PF00013
PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF159	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0002951BB1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:53323619..53329813

Molecular Weight (calculated)

39227.1 Da

IEP (calculated)

8.771

GRAVY (calculated)

-0.365

Length

362 amino acids

Sequence
(BLAST)

001: MSQQGQIPIN PMLPPQNPMA TMPMPMHMPL PMPLQIPFSA QDTAPSSGKR RRDDEAPGTA AAPDQSAAKR AKGQDVIFRI VVPSRHIGKV IGKEGHRIQK
101: IREDTKATIK IADAIARHEE RVIIISSKDN DEKVTDAEKA LEQIAHLILK EDDSSLDASK VTAGHVAANT IRLLIAGSQA GGLIGTSGQN IEKLRDSSGA
201: SITVLAPNQL PLCASAHESD RVVQLSGDVP AVMKALEEIG CQLRENPPRQ VISISPTYNY AAIRPSQPYL DPTSVDYVTF EMLISETMVG GLIGRCGSNI
301: SRIRNESGAM IKVYGGKGEQ KHRQIQFGGS AQQVALAKQR VDEYIYSQLI QQTGTQQSAF QR

Best Arabidopsis Sequence Match ( AT5G15270.1 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSGLSSHSST YRRRNYDY

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.