Factsheet for VIT_15s0021g01940.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00973	Soybean	nucleus, plastid	73.99	70.72
KRH40252	Soybean	cytosol, golgi, nucleus, plastid	75.14	67.01
PGSC0003DMT400066836	Potato	nucleus, plastid	67.92	52.81
Solyc01g090480.2.1	Tomato	nucleus	67.63	52.7
VIT_09s0002g00070.t01	Wine grape	mitochondrion	10.12	27.34
VIT_09s0002g00030.t01	Wine grape	cytosol, nucleus, plastid	14.74	21.61
VIT_07s0141g00800.t01	Wine grape	cytosol	24.28	19.4
VIT_14s0006g00030.t01	Wine grape	cytosol	15.61	19.08
VIT_11s0052g00030.t01	Wine grape	plastid	24.28	18.03
VIT_14s0108g01040.t01	Wine grape	nucleus	26.3	16.61
VIT_14s0081g00440.t01	Wine grape	cytosol	23.7	16.05
VIT_01s0026g02650.t01	Wine grape	nucleus	26.01	15.73
VIT_03s0038g00420.t01	Wine grape	plastid	27.46	14.66
VIT_09s0054g00450.t01	Wine grape	plastid	28.61	14.06
VIT_14s0006g02960.t01	Wine grape	nucleus, plastid	27.46	14.05
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	25.14	13.96
VIT_18s0001g08280.t01	Wine grape	cytosol	27.17	13.41
VIT_16s0098g01660.t01	Wine grape	nucleus	23.7	12.41

Protein Annotations

EntrezGene:100256424	wikigene:100256424	Gene3D:3.30.1370.10	MapMan:35.1	ProteinID:CBI16638	ProteinID:CBI16638.3
UniProt:D7SLW0	EMBL:FN594952	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EntrezGene:LOC100256424	wikigene:LOC100256424
PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF159	SMART:SM00322	SUPFAM:SSF54791
TIGR:TC67159	UniParc:UPI0001BE0EF1	ArrayExpress:VIT_15s0021g01940	EnsemblPlantsGene:VIT_15s0021g01940	EnsemblPlants:VIT_15s0021g01940.t01	RefSeq:XP_002272998
RefSeq:XP_002272998.2	RefSeq:XP_002272998.3	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr15:-:12624372..12634726

Molecular Weight (calculated)

37379.7 Da

IEP (calculated)

7.546

GRAVY (calculated)

-0.343

Length

346 amino acids

Sequence
(BLAST)

001: MAQEGEVPRT PIPQSEAPAP SEPTSMKRPR DDDGGVIASA TGEVADDHRS PKRRAKNQDV LFRIVVPSRQ IGKVIGKEGS RIQKIREETK ATIKIADAIA
101: RHEERVIIIS SKDSENVISD AENALLQVAS LILKEDDSNT DALKVGVGHV VANAIRLLIA GSQAGCLIGM SGQNIEKLRN SSGATITILP QNQLPLCASA
201: HDSDRMVQIS GDVPAVLKAL EEIGCQLREN PPRQVISISP IYNPNTNRTS QQYLDPASAD YVTLNMMIPE TLVGGLIGRC GSNISRIRNE SGAMIKVYGG
301: KGEQNHRQIQ FGGSAQQVAL AKQRVDEYIY SQLMQQAGAQ HSVLQI

Best Arabidopsis Sequence Match ( AT5G15270.3 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.