Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400066836 | Potato | nucleus, plastid | 95.95 | 95.73 |
| VIT_15s0021g01940.t01 | Wine grape | nucleus | 52.7 | 67.63 |
| KRH00973 | Soybean | nucleus, plastid | 53.6 | 65.75 |
| KRH40252 | Soybean | cytosol, golgi, nucleus, plastid | 53.6 | 61.34 |
| Solyc05g041740.1.1 | Tomato | plastid | 10.59 | 22.38 |
| Solyc12g055790.1.1 | Tomato | nucleus | 11.71 | 20.88 |
| Solyc08g074330.1.1 | Tomato | plastid | 10.14 | 19.82 |
| Solyc09g066120.2.1 | Tomato | nucleus | 20.05 | 18.09 |
| Solyc07g008490.2.1 | Tomato | nucleus | 18.69 | 17.22 |
| Solyc05g007810.2.1 | Tomato | nucleus | 19.82 | 16.54 |
| Solyc05g043210.1.1 | Tomato | plastid | 9.23 | 16.21 |
| Solyc05g042180.1.1 | Tomato | plastid | 9.46 | 15.38 |
| Solyc06g084010.2.1 | Tomato | nucleus | 11.04 | 15.17 |
| Solyc01g097010.2.1 | Tomato | nucleus | 11.94 | 14.6 |
| Solyc08g048500.2.1 | Tomato | nucleus | 19.59 | 14.1 |
| Solyc02g067210.2.1 | Tomato | nucleus | 19.14 | 13.8 |
| Solyc02g088120.2.1 | Tomato | nucleus | 15.99 | 13.52 |
| Solyc05g043200.1.1 | Tomato | nucleus, peroxisome, plastid | 9.68 | 13.44 |
| Solyc03g034200.2.1 | Tomato | nucleus | 20.5 | 12.87 |
| Solyc03g082980.2.1 | Tomato | nucleus | 19.14 | 12.72 |
| Solyc01g106020.2.1 | Tomato | plastid | 18.47 | 12.69 |
| Solyc06g084000.2.1 | Tomato | nucleus | 6.76 | 12.66 |
| Solyc11g010840.1.1 | Tomato | plastid | 15.77 | 11.42 |
| Solyc04g077060.2.1 | Tomato | nucleus | 11.26 | 10.57 |
| Solyc12g055780.1.1 | Tomato | cytosol, nucleus | 5.63 | 6.76 |
Protein Annotations
| Gene3D:3.30.1370.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR036612 | UniProt:K4AYY9 | InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf | PFAM:PF00013 |
| PFscan:PS50084 | PANTHER:PTHR10288 | PANTHER:PTHR10288:SF159 | SMART:SM00322 | SUPFAM:SSF54791 | EnsemblPlantsGene:Solyc01g090480.2 |
| EnsemblPlants:Solyc01g090480.2.1 | UniParc:UPI0002761F4E | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1:-:84161132..84166408
Molecular Weight (calculated)
47878.8 Da
IEP (calculated)
7.471
GRAVY (calculated)
-0.459
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MANSQQIETS INPSPNPPPP GSPPPAAAVV SRPSDDETNR SATAKRSREE YAPAATDEAG LSGDDVPPLK KRVKVSQDVV YRIVVPSRQI GKVIGKAGHR
101: IQKIREETKA TIKVADAIAR HEERVIIISS RDNDDMFSDA ENALHQIVSL ILKDDGNLDA QKVGTGHVAA NTVRFLIAGS QAGGLIGMSG QNIETLRNSS
201: GATITVLAQH QLPLCASAHE SDRVVQLAGD IPAVLRAVVE IGCQLRDNPP KQVISISPTY NLGYSRPPQP HVDPSSAEYV NLTMLVPESL AGGLIGRCGS
301: NISRIRAESG ATIKVHGGKG EQKQRQVHLG GSAQQVALAK QRVDEYVYSQ LMLQAGGEQL QDTMQLQQQS MQLQQSMHLQ HSMQMQQQIP NTSATLMPGY
401: NHGHGVYMNS NQEAHMMASY PQVYTSTNPQ APGYYGQSYP APQM
101: IQKIREETKA TIKVADAIAR HEERVIIISS RDNDDMFSDA ENALHQIVSL ILKDDGNLDA QKVGTGHVAA NTVRFLIAGS QAGGLIGMSG QNIETLRNSS
201: GATITVLAQH QLPLCASAHE SDRVVQLAGD IPAVLRAVVE IGCQLRDNPP KQVISISPTY NLGYSRPPQP HVDPSSAEYV NLTMLVPESL AGGLIGRCGS
301: NISRIRAESG ATIKVHGGKG EQKQRQVHLG GSAQQVALAK QRVDEYVYSQ LMLQAGGEQL QDTMQLQQQS MQLQQSMHLQ HSMQMQQQIP NTSATLMPGY
401: NHGHGVYMNS NQEAHMMASY PQVYTSTNPQ APGYYGQSYP APQM
001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG
Arabidopsis Description
RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.