Factsheet for Solyc01g106020.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083772	Potato	plastid	96.9	97.36
VIT_03s0038g00420.t01	Wine grape	plastid	54.49	54.32
KRH49838	Soybean	plastid	47.52	52.03
KRH42077	Soybean	plastid	47.06	51.79
KRH21739	Soybean	plastid	50.93	46.01
KRH10613	Soybean	plastid	49.38	43.88
CDX84522	Canola	nucleus	42.11	36.71
Solyc11g010840.1.1	Tomato	plastid	33.13	34.91
Solyc12g055780.1.1	Tomato	cytosol, nucleus	18.73	32.7
Bra024292.1-P	Field mustard	nucleus	42.41	31.97
Solyc12g055790.1.1	Tomato	nucleus	12.07	31.33
AT5G64390.3	Thale cress	nucleus	41.49	30.95
Solyc04g077060.2.1	Tomato	nucleus	21.98	30.02
AT5G09560.1	Thale cress	cytosol	25.23	27.17
Solyc05g007810.2.1	Tomato	nucleus	21.05	25.56
Solyc03g082980.2.1	Tomato	nucleus	26.01	25.15
Solyc08g048500.2.1	Tomato	nucleus	23.84	24.96
OQU88922	Sorghum	nucleus, peroxisome, plastid	24.46	24.53
Solyc02g088120.2.1	Tomato	nucleus	19.2	23.62
Solyc02g067210.2.1	Tomato	nucleus	21.98	23.05
Zm00001d019538_P002	Maize	plastid	23.99	22.96
Os07t0439100-01	Rice	cytosol	8.2	22.75
Solyc05g041740.1.1	Tomato	plastid	7.28	22.38
Solyc03g034200.2.1	Tomato	nucleus	22.29	20.37
Solyc01g090480.2.1	Tomato	nucleus	12.69	18.47
Solyc01g097010.2.1	Tomato	nucleus	9.91	17.63
Solyc07g008490.2.1	Tomato	nucleus	12.69	17.01
Solyc05g043210.1.1	Tomato	plastid	6.5	16.6
Solyc09g066120.2.1	Tomato	nucleus	12.54	16.46
Solyc08g074330.1.1	Tomato	plastid	5.42	15.42
Solyc05g042180.1.1	Tomato	plastid	6.5	15.38
Solyc06g084000.2.1	Tomato	nucleus	4.64	12.66
Solyc05g043200.1.1	Tomato	nucleus, peroxisome, plastid	6.19	12.5
Solyc06g084010.2.1	Tomato	nucleus	6.04	12.07

Protein Annotations

EnsemblPlants:Solyc01g106020.2.1	EnsemblPlantsGene:Solyc01g106020.2	Gene3D:3.30.1370.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PANTHER:PTHR10288
PANTHER:PTHR10288:SF173	PFAM:PF00013	PFscan:PS50084	SEG:seg	SMART:SM00322	SUPFAM:SSF54791
UniParc:UPI0002767528	UniProt:K4B2H1	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr1:+:94000883..94007511

Molecular Weight (calculated)

68660.2 Da

IEP (calculated)

8.227

GRAVY (calculated)

-0.136

Length

646 amino acids

Sequence
(BLAST)

001: MHENSVAASV PNSSTAAGAV GVPAVVNNSH LPPQPLARRV VFRLLCHASR VGGVIGKSGS IIRQLQQDTS AKIHIDVSAP NDHNRLIVVV APASVNKRIR
101: LLGPIGDNQR NEEIDEIEVS AAQEALVRVF ERVIEVTAEN NGLVLGVENV VSCRLLVKGN QVGALMGKGG KVIDTIRREN GCRIKVLTSG KMPSCASPND
201: EIVEIEGDIL AVKKALVAVS RRLQDCFSVE RTRTVENAPI ELDSEKTLPP EPVDLPAQRS SMSQPITTSS FSGASGCHSV PLDADKFSSS DSKMPLQEVA
301: FRILCTNDKV GAIIGKAGTI VRALQNDSGA SIAVGPNVAE CNERMITITA LENLELRKSP AQTAVVLVFD RILDAGSGMN LGTRSLITFR LVVANSQVGC
401: LLGKGGAIIS DIRKETGTSI RIFRGDQVPK CVSDNDEVVQ IAGEFVNVQD VLRNVTGRLR DNLLAAKVSN GGVSRNSSPL TSESSPSGQM REPPFGFHRS
501: SGVSHGNNQH PELTRSINNL VLSNKTDHPP SPGLWSSQTR PGVNQRGAFD VSKGSNSVKG GMELGSGSRS AIVTNTTVKI MVPENIIGCV YGEDGSNLTR
601: LRQISGARVM VHEPRPGTTD RIIVISGTPD ETQAAQSLLQ AFILTE

Best Arabidopsis Sequence Match ( AT1G51580.1 )
(BLAST)

001: MEFSTSKRPA TTATAAESVH FRLLCPATRT GAIIGKGGSV IRHLQSVTGS KIRVIDDIPV PSEERVVLII APSGKKKDES NVCDSENPGS EEPKQEKGSE
101: CAGTSGGDDE EAPSSAQMAL LRVFERIVFG DDAATVDGDE LDKGESEGLC RMIVRGNQVD YLMSKGGKMI QKIREDSGAI VRISSTDQIP PCAFPGDVVI
201: QMNGKFSSVK KALLLVTNCL QESGAPPTWD ECPFPQPGYP PEYHSMEYHP QWDHPPPNPM PEDVGPFNRP VVEEEVAFRL LCPADKVGSL IGKGGAVVRA
301: LQNESGASIK VSDPTHDSEE RIIVISAREN LERRHSLAQD GVMRVHNRIV EIGFEPSAAV VARLLVHSPY IGRLLGKGGH LISEMRRATG ASIRVFAKDQ
401: ATKYESQHDE IVQVIGNLKT VQDALFQILC RLREAMFPGR LPFQGMGGPP PPFMGPYPEP PPPFGPRQYP ASPDRYHSPV GPFHERHCHG PGFDRPPGPG
501: FDRPPSPMSW TPQPGIDGHP GGMVPPDVNH GFALRNEPIG SENPVMTSAN VEIVIPQAYL GHVYGENCSN LNYIKQVSGA NVVVHDPKAG TTEGLVVVSG
601: TSDQAHFAQS LLHAFILCGQ S

Arabidopsis Description

At1g51580 [Source:UniProtKB/TrEMBL;Acc:Q9C553]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.