Factsheet for Solyc12g055780.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g114850.2.1
Solyc03g116320.2.1
Solyc05g007420.1.1
Solyc05g012040.2.1
Solyc06g030610.1.1
Solyc06g030620.1.1
Solyc06g049010.1.1
Solyc08g060810.2.1
Solyc12g038520.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51580.1	Solyc03g114850.2.1	AT1G69170.1	21798944
AT1G51580.1	Solyc05g012040.2.1	AT1G69170.1	21798944
AT1G51580.1	Solyc12g038520.1.1	AT1G69170.1	21798944
AT1G51580.1	Solyc05g007420.1.1	AT1G69690.1	21798944
AT1G51580.1	Solyc06g030610.1.1	AT2G25490.1	21798944
AT1G51580.1	Solyc06g030620.1.1	AT2G25490.1	21798944
AT1G51580.1	Solyc06g049010.1.1	AT2G25490.1	21798944
AT1G51580.1	Solyc08g060810.2.1	AT2G25490.1	21798944
AT1G51580.1	Solyc03g116320.2.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074198	Potato	plastid	95.68	79.73
KRH47290	Soybean	mitochondrion, nucleus	49.46	32.74
KRH44614	Soybean	mitochondrion, nucleus	48.92	32.04
VIT_09s0054g00450.t01	Wine grape	plastid	59.46	31.25
AT1G51580.1	Thale cress	cytosol, plastid	52.43	31.24
CDY52947	Canola	plastid	45.68	29.34
Bra014290.1-P	Field mustard	plastid	45.95	29.26
CDY46555	Canola	plastid	45.95	29.26
TraesCS5B01G276400.1	Wheat	plastid	42.97	25.44
TraesCS5D01G284200.4	Wheat	plastid	42.97	25.36
TraesCS5A01G276800.5	Wheat	plastid	42.7	25.2
Os09t0498600-01	Rice	plastid	41.08	24.68
HORVU5Hr1G075110.3	Barley	mitochondrion	42.16	24.22
KXG35952	Sorghum	plastid	39.46	23.47
GSMUA_Achr10P...	Banana	nucleus	41.89	23.0
Zm00001d006055_P002	Maize	plastid	38.38	22.76
Solyc04g077060.2.1	Tomato	nucleus	27.3	21.35
Solyc01g106020.2.1	Tomato	plastid	32.7	18.73
Solyc11g010840.1.1	Tomato	plastid	26.22	15.82
Solyc08g048500.2.1	Tomato	nucleus	25.41	15.23
Solyc05g007810.2.1	Tomato	nucleus	20.0	13.91
Solyc06g084000.2.1	Tomato	nucleus	8.65	13.5
Solyc03g082980.2.1	Tomato	nucleus	23.78	13.17
Solyc02g067210.2.1	Tomato	nucleus	21.89	13.15
Solyc02g088120.2.1	Tomato	nucleus	17.3	12.19
Solyc03g034200.2.1	Tomato	nucleus	19.19	10.04
Solyc01g097010.2.1	Tomato	nucleus	7.57	7.71
Solyc05g042180.1.1	Tomato	plastid	5.41	7.33
Solyc09g066120.2.1	Tomato	nucleus	8.38	6.3
Solyc05g043200.1.1	Tomato	nucleus, peroxisome, plastid	5.41	6.25
Solyc08g074330.1.1	Tomato	plastid	3.78	6.17
Solyc01g090480.2.1	Tomato	nucleus	6.76	5.63
Solyc07g008490.2.1	Tomato	nucleus	7.03	5.39
Solyc05g043210.1.1	Tomato	plastid	2.16	3.16
Solyc12g055790.1.1	Tomato	nucleus	0.81	1.2
Solyc05g041740.1.1	Tomato	plastid	0.27	0.48
Solyc06g084010.2.1	Tomato	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc12g055780.1.1	EnsemblPlantsGene:Solyc12g055780.1	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
PANTHER:PTHR10288	PANTHER:PTHR10288:SF174	PFAM:PF00013	PFscan:PS50084	SMART:SM00322	SUPFAM:SSF54791
UniParc:UPI0002769B94	UniProt:K4DFQ9	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr12:-:61761034..61764439

Molecular Weight (calculated)

40390.0 Da

IEP (calculated)

6.898

GRAVY (calculated)

-0.284

Length

370 amino acids

Sequence
(BLAST)

001: MSQNGTGYHT PEQFSRSSGV ESAGINHRMV LEEEVVFKVL CPVDKVGNLI GKGGSIIRVM QTETGASVKV ADSASDVDER IVVISARENL EQRHSPAQEA
101: LMRVLGRIAE IGFEPGAAVV SRLLVHARHM SCLFANGGIL IAELRRVTGA SIRIFPREQS PKYGSHTEEV LQVIGSMQSV QDALFQITCR LRDAMFPVKP
201: HVSTIAPPHF PPYSEVPSPS FRPRHDPASP SYHSPVGYPH DRAPHFYGYE RQGHAPYFDR PPSPGRWGPQ GDNSRHTAGV ADCSSASEAA PNLPETTVEM
301: VIPEMYIKYV YGEDSSNLHH IKRISGAKVV IHDPVAGSAC GCAILSGTKD QVEYAQTLIH AFIYCEKGDT

Best Arabidopsis Sequence Match ( AT1G51580.1 )
(BLAST)

001: MEFSTSKRPA TTATAAESVH FRLLCPATRT GAIIGKGGSV IRHLQSVTGS KIRVIDDIPV PSEERVVLII APSGKKKDES NVCDSENPGS EEPKQEKGSE
101: CAGTSGGDDE EAPSSAQMAL LRVFERIVFG DDAATVDGDE LDKGESEGLC RMIVRGNQVD YLMSKGGKMI QKIREDSGAI VRISSTDQIP PCAFPGDVVI
201: QMNGKFSSVK KALLLVTNCL QESGAPPTWD ECPFPQPGYP PEYHSMEYHP QWDHPPPNPM PEDVGPFNRP VVEEEVAFRL LCPADKVGSL IGKGGAVVRA
301: LQNESGASIK VSDPTHDSEE RIIVISAREN LERRHSLAQD GVMRVHNRIV EIGFEPSAAV VARLLVHSPY IGRLLGKGGH LISEMRRATG ASIRVFAKDQ
401: ATKYESQHDE IVQVIGNLKT VQDALFQILC RLREAMFPGR LPFQGMGGPP PPFMGPYPEP PPPFGPRQYP ASPDRYHSPV GPFHERHCHG PGFDRPPGPG
501: FDRPPSPMSW TPQPGIDGHP GGMVPPDVNH GFALRNEPIG SENPVMTSAN VEIVIPQAYL GHVYGENCSN LNYIKQVSGA NVVVHDPKAG TTEGLVVVSG
601: TSDQAHFAQS LLHAFILCGQ S

Arabidopsis Description

At1g51580 [Source:UniProtKB/TrEMBL;Acc:Q9C553]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.