Factsheet for GSMUA_Achr10P30910_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P15920_001
GSMUA_Achr4P00500_001
GSMUA_Achr4P30680_001
GSMUA_Achr6P02720_001
GSMUA_Achr6P05220_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001
GSMUA_Achr9P28510_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51580.1	GSMUA_Achr10P...	AT2G25490.1	21798944
AT1G51580.1	GSMUA_Achr2P15920_001	AT2G25490.1	21798944
AT1G51580.1	GSMUA_Achr4P30680_001	AT2G25490.1	21798944
AT1G51580.1	GSMUA_Achr6P05220_001	AT2G25490.1	21798944
AT1G51580.1	GSMUA_Achr9P28510_001	AT2G25490.1	21798944
AT1G51580.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT1G51580.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT1G51580.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT1G51580.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g055790.1.1	Tomato	nucleus	19.29	52.21
PGSC0003DMT400087680	Potato	plastid	18.55	50.2
VIT_09s0054g00450.t01	Wine grape	plastid	50.0	47.87
KRH47290	Soybean	mitochondrion, nucleus	39.61	47.76
KRH44614	Soybean	mitochondrion, nucleus	39.61	47.26
Os09t0498600-01	Rice	plastid	42.43	46.43
TraesCS5B01G276400.1	Wheat	plastid	42.58	45.92
HORVU5Hr1G075110.3	Barley	mitochondrion	43.77	45.81
TraesCS5D01G284200.4	Wheat	plastid	42.28	45.45
TraesCS5A01G276800.5	Wheat	plastid	42.28	45.45
KXG35952	Sorghum	plastid	41.84	45.34
Zm00001d006055_P002	Maize	plastid	40.21	43.43
Solyc12g055780.1.1	Tomato	cytosol, nucleus	23.0	41.89
PGSC0003DMT400074198	Potato	plastid	27.45	41.67
AT1G51580.1	Thale cress	cytosol, plastid	37.98	41.22
CDY52947	Canola	plastid	33.38	39.06
CDY46555	Canola	plastid	33.38	38.73
Bra014290.1-P	Field mustard	plastid	33.09	38.38
GSMUA_Achr6P13890_001	Banana	cytosol	33.38	34.35
GSMUA_Achr10P...	Banana	cytosol	32.79	33.38
GSMUA_Achr7P11520_001	Banana	mitochondrion, nucleus	24.18	30.75
GSMUA_Achr6P10750_001	Banana	nucleus	23.59	29.89
GSMUA_Achr3P21030_001	Banana	nucleus	25.22	25.53
GSMUA_Achr6P03670_001	Banana	cytosol, nucleus, plastid	23.44	24.27
GSMUA_Achr2P15270_001	Banana	nucleus	24.93	24.17
GSMUA_Achr9P18150_001	Banana	endoplasmic reticulum, golgi	24.04	23.44
GSMUA_Achr7P01590_001	Banana	nucleus	14.24	21.82
GSMUA_Achr5P03200_001	Banana	cytosol	6.53	16.6
GSMUA_Achr11P...	Banana	mitochondrion	13.35	15.71
GSMUA_Achr8P14980_001	Banana	cytosol	12.91	15.54

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	EnsemblPlantsGene:GSMUA_Achr10G30910_001	EnsemblPlants:GSMUA_Achr10P30910_001	EnsemblPlants:GSMUA_Achr10T30910_001	InterPro:IPR036612	InterPro:KH_dom
InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	UniProt:M0RMW5	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288
PANTHER:PTHR10288:SF174	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI000296435C	SEG:seg	:

Description

Putative KH domain-containing protein At4g18375 [Source:GMGC_GENE;Acc:GSMUA_Achr10G30910_001]

Coordinates

chr10:-:33113282..33123308

Molecular Weight (calculated)

71365.6 Da

IEP (calculated)

7.892

GRAVY (calculated)

-0.252

Length

674 amino acids

Sequence
(BLAST)

001: MEGPKRPLDL SSVAAAAGEP NPASPSPSSS SSSSASASKR RHPPSARVPF RSPPPLKPSS VQIIFRILCP GDKSGGVVGK GGAFLRRCRE ETGARIRVED
101: PVPGSDERVV VVVAEAQPKR WAEAGGGEAE ADASPAQRAL IRVFERILRV DEDGLGEGID GGGGGTKEKG MHGLVLCRLL AQGNQVGSVL GKGGKVVEKI
201: RQGSGAQVRV FGKDQVPPCA SAGDELIHIS GSFSSVKKAL LSVSSCLQDY QRTEPTSSAR TVPLVPMDPY AHWNYFPSPH VSEYHFRGYA PNPGAEISPS
301: SQRKVEVVFR MLCSNDKVWS IIGKGGIVIR TMQNETGASI KIADPVSDSD ERVITISAHE ISELCRSPAQ DAVLRVHSRL SEMLDKGSAV AARLLVPSHQ
401: IGCLLGKGGA VIAEMRRATG ASIRIFLKEQ VPKCAQPNDE VVQVTGTFQS VQDALLLITS RIRDIIFPFK TYSSAGIGQS AHATYEMPFV LPTARHELTP
501: SGANPPVSIS DSADHAVGFH NTLDRQHPVS QSVDQLGVDR GSYGNETPRP CPATDCAAPT LTPEVVNSGN TRRNQDAGTS LDFESGLIGS GSQANVVRSK
601: TVEVVVPQQY LGFVYGDNGS NLADLREISG AKVAVRDPKP GATEGAVTIS GTIEQTRTAQ SLLHAFILCG LEHN

Best Arabidopsis Sequence Match ( AT1G51580.1 )
(BLAST)

001: MEFSTSKRPA TTATAAESVH FRLLCPATRT GAIIGKGGSV IRHLQSVTGS KIRVIDDIPV PSEERVVLII APSGKKKDES NVCDSENPGS EEPKQEKGSE
101: CAGTSGGDDE EAPSSAQMAL LRVFERIVFG DDAATVDGDE LDKGESEGLC RMIVRGNQVD YLMSKGGKMI QKIREDSGAI VRISSTDQIP PCAFPGDVVI
201: QMNGKFSSVK KALLLVTNCL QESGAPPTWD ECPFPQPGYP PEYHSMEYHP QWDHPPPNPM PEDVGPFNRP VVEEEVAFRL LCPADKVGSL IGKGGAVVRA
301: LQNESGASIK VSDPTHDSEE RIIVISAREN LERRHSLAQD GVMRVHNRIV EIGFEPSAAV VARLLVHSPY IGRLLGKGGH LISEMRRATG ASIRVFAKDQ
401: ATKYESQHDE IVQVIGNLKT VQDALFQILC RLREAMFPGR LPFQGMGGPP PPFMGPYPEP PPPFGPRQYP ASPDRYHSPV GPFHERHCHG PGFDRPPGPG
501: FDRPPSPMSW TPQPGIDGHP GGMVPPDVNH GFALRNEPIG SENPVMTSAN VEIVIPQAYL GHVYGENCSN LNYIKQVSGA NVVVHDPKAG TTEGLVVVSG
601: TSDQAHFAQS LLHAFILCGQ S

Arabidopsis Description

At1g51580 [Source:UniProtKB/TrEMBL;Acc:Q9C553]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.