Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0006g02960.t01 | Wine grape | nucleus, plastid | 45.65 | 44.97 |
| Os10t0495000-01 | Rice | nucleus | 51.35 | 44.88 |
| KXG38256 | Sorghum | nucleus | 48.95 | 40.75 |
| HORVU1Hr1G043680.7 | Barley | nucleus | 49.25 | 40.25 |
| Zm00001d013963_P002 | Maize | nucleus | 49.25 | 40.2 |
| GSMUA_Achr7P11520_001 | Banana | mitochondrion, nucleus | 31.68 | 39.81 |
| TraesCS1A01G164200.3 | Wheat | nucleus | 49.4 | 39.12 |
| TraesCS1D01G161200.3 | Wheat | nucleus | 48.8 | 39.06 |
| TraesCS1B01G181000.3 | Wheat | nucleus | 48.65 | 38.53 |
| GSMUA_Achr6P10750_001 | Banana | nucleus | 30.18 | 37.78 |
| Solyc03g034200.2.1 | Tomato | nucleus | 39.94 | 37.62 |
| Zm00001d032597_P006 | Maize | golgi, plasma membrane | 49.1 | 33.16 |
| GSMUA_Achr6P13890_001 | Banana | cytosol | 28.23 | 28.7 |
| GSMUA_Achr6P03670_001 | Banana | cytosol, nucleus, plastid | 27.48 | 28.11 |
| GSMUA_Achr10P... | Banana | cytosol | 27.78 | 27.95 |
| GSMUA_Achr9P18150_001 | Banana | endoplasmic reticulum, golgi | 26.28 | 25.33 |
| GSMUA_Achr10P... | Banana | nucleus | 25.53 | 25.22 |
| GSMUA_Achr2P15270_001 | Banana | nucleus | 24.47 | 23.45 |
| GSMUA_Achr7P01590_001 | Banana | nucleus | 14.11 | 21.36 |
| GSMUA_Achr5P03200_001 | Banana | cytosol | 7.81 | 19.62 |
| GSMUA_Achr8P14980_001 | Banana | cytosol | 14.11 | 16.79 |
| GSMUA_Achr11P... | Banana | mitochondrion | 14.11 | 16.4 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P21030_001 | EnsemblPlants:GSMUA_Achr3T21030_001 | EnsemblPlantsGene:GSMUA_Achr3G21030_001 | Gene3D:3.30.1370.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf |
| PANTHER:PTHR10288 | PANTHER:PTHR10288:SF130 | PFAM:PF00013 | PFscan:PS50084 | SEG:seg | SMART:SM00322 |
| SUPFAM:SSF54791 | UniParc:UPI000296E784 | UniProt:M0SGG9 | MapMan:35.1 | : | : |
Description
Putative KH domain-containing protein At4g18375 [Source:GMGC_GENE;Acc:GSMUA_Achr3G21030_001]
Coordinates
chr3:+:22078971..22083465
Molecular Weight (calculated)
72394.1 Da
IEP (calculated)
7.360
GRAVY (calculated)
-0.549
Length
666 amino acids
Sequence
(BLAST)
(BLAST)
001: MDERRTYGKN KSGSFRKRTY DQFDNGKRKK HNSGRDHGST TTKPIDTIYR ILCPVKKIGS VLGKGGDIVN TLRDETHAKI RVADAIPGAE ERVIIIFSYL
101: SQSEKNDSDQ DLDDSDGNEL EDMQPHCPAQ DALLKIHDRI AADEILRGGV VQSKTEPDDV VTARILVPKN QVGCLLGKGG TIIQQLRSET GANIRVLPSD
201: HLPPCAMDSD ELVQVSGVPS IVKKALYRIS TLLHQHPHKE NPPLEDLIYA STQGSYHSEP SVPPPLPQGN RVWSQYHSDA HVPPTIPRFS RYLDEPSGYP
301: PSNFGRSNFG NDGETVEEFS IRILCATVKI GGVIGKGGVN VRQLEQQTGA HIQVEDTAPE AEERVISISC KEVPWDTISP TIEAVLQLQS RTSASSENGV
401: ITTRLLVPSS KVGCILGQGG NIITEMRRRT KADIRVYSKD DKPKYTSANE ELVQISGTRD VARDALAEIA SRLRARTFRG GNAAVNPAPS APFHGIPPLE
501: SRSDRGVPSY GNAALDYAPP SHFRGYTPES FSAREIPTSS MVGPGKSVGY SYPKGYGQAH EAQYYSTPSA APGFSHLSRY SNFNSSMDVK IPNSAVAPVI
601: GADGSNISDI HQVGGRLKLH DPPFGAPERV DMHGSSDQLK VGHGPLPSYM TSGGQSFPPS QVLRPY
101: SQSEKNDSDQ DLDDSDGNEL EDMQPHCPAQ DALLKIHDRI AADEILRGGV VQSKTEPDDV VTARILVPKN QVGCLLGKGG TIIQQLRSET GANIRVLPSD
201: HLPPCAMDSD ELVQVSGVPS IVKKALYRIS TLLHQHPHKE NPPLEDLIYA STQGSYHSEP SVPPPLPQGN RVWSQYHSDA HVPPTIPRFS RYLDEPSGYP
301: PSNFGRSNFG NDGETVEEFS IRILCATVKI GGVIGKGGVN VRQLEQQTGA HIQVEDTAPE AEERVISISC KEVPWDTISP TIEAVLQLQS RTSASSENGV
401: ITTRLLVPSS KVGCILGQGG NIITEMRRRT KADIRVYSKD DKPKYTSANE ELVQISGTRD VARDALAEIA SRLRARTFRG GNAAVNPAPS APFHGIPPLE
501: SRSDRGVPSY GNAALDYAPP SHFRGYTPES FSAREIPTSS MVGPGKSVGY SYPKGYGQAH EAQYYSTPSA APGFSHLSRY SNFNSSMDVK IPNSAVAPVI
601: GADGSNISDI HQVGGRLKLH DPPFGAPERV DMHGSSDQLK VGHGPLPSYM TSGGQSFPPS QVLRPY
001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG
Arabidopsis Description
RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.