Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol | 85.65 | 84.74 |
| VIT_18s0001g08280.t01 | Wine grape | cytosol | 60.76 | 56.78 |
| Os01t0235800-01 | Rice | cytosol | 38.78 | 54.27 |
| KRH52837 | Soybean | plastid | 53.59 | 51.92 |
| KRH62129 | Soybean | plastid | 53.44 | 51.62 |
| Solyc04g077060.2.1 | Tomato | nucleus | 36.49 | 50.53 |
| PGSC0003DMT400012623 | Potato | nucleus, plastid | 50.99 | 49.48 |
| TraesCS3A01G158700.1 | Wheat | nucleus | 48.4 | 44.96 |
| TraesCS3B01G189700.1 | Wheat | nucleus | 48.4 | 44.77 |
| TraesCS3D01G166400.1 | Wheat | cytosol, mitochondrion, nucleus | 48.09 | 44.68 |
| Zm00001d009014_P004 | Maize | nucleus | 46.26 | 42.98 |
| EES02175 | Sorghum | nucleus, plastid | 46.87 | 42.88 |
| HORVU3Hr1G057270.16 | Barley | plastid | 47.63 | 40.21 |
| GSMUA_Achr10P... | Banana | nucleus | 34.35 | 33.38 |
| GSMUA_Achr6P10750_001 | Banana | nucleus | 26.87 | 33.08 |
| GSMUA_Achr7P11520_001 | Banana | mitochondrion, nucleus | 26.11 | 32.26 |
| GSMUA_Achr3P21030_001 | Banana | nucleus | 28.7 | 28.23 |
| GSMUA_Achr2P15270_001 | Banana | nucleus | 28.24 | 26.62 |
| GSMUA_Achr6P03670_001 | Banana | cytosol, nucleus, plastid | 26.26 | 26.42 |
| GSMUA_Achr9P18150_001 | Banana | endoplasmic reticulum, golgi | 26.87 | 25.47 |
| GSMUA_Achr7P01590_001 | Banana | nucleus | 14.5 | 21.59 |
| GSMUA_Achr5P03200_001 | Banana | cytosol | 7.18 | 17.74 |
| GSMUA_Achr8P14980_001 | Banana | cytosol | 13.59 | 15.89 |
| GSMUA_Achr11P... | Banana | mitochondrion | 13.28 | 15.18 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P13890_001 | EnsemblPlants:GSMUA_Achr6T13890_001 | EnsemblPlantsGene:GSMUA_Achr6G13890_001 | Gene3D:3.30.1370.10 | Gene3D:3.30.310.210 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 |
| InterPro:KH_dom_type_1_sf | PANTHER:PTHR10288 | PANTHER:PTHR10288:SF148 | PFAM:PF00013 | PFscan:PS50084 | SEG:seg |
| SMART:SM00322 | SUPFAM:SSF54791 | UniParc:UPI0002958D0D | UniProt:M0T6T7 | MapMan:35.1 | : |
Description
Putative KH domain-containing protein At4g18375 [Source:GMGC_GENE;Acc:GSMUA_Achr6G13890_001]
Coordinates
chr6:-:9214406..9222693
Molecular Weight (calculated)
70549.1 Da
IEP (calculated)
7.859
GRAVY (calculated)
-0.266
Length
655 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFPFLPSKR PYERNPLEPN GRGKWQKTGP SITQQNQLKV PPGAIIFRVL CPASKSGSVI GKGGGIVARI RQETGAKIRL EETVPGCDER VIVDSSPVES
101: SKFDGVPSSV VKALLLVFER IIEGEAENDD EDEANKKLSN VSARLLVLSN QVGCLLGKGG SVIKQMSADS GAQIRILPRD KLPLCASQQD EIVQLTGGVE
201: SVKKALHLVA QQLLDNPPRE RDLFPPMGSS GPSSHPFASG PRPEGVPPLN YHHPHQGPPF SNRPHHIADF HPSIGPPFPK FHESGPPLQP QLSPELITYR
301: LFCSSDKVGS VIGKGGNIVK ALQNDTGCEI KVLETTPESD DRIIVISGLA LPSDRIAPVQ DAVLRVQHRL VMAVPDAKDS TVLSRLLVAS NQTGCLLGKG
401: GAIIAEMRKL SGAHIRILGK DQIPKGVPEN DEVVQISGEF GAVQEALLQI TSRLKHHVFR DKLSAMNPNA PPAFIEQLPP YGLYMGRRES SPSRLYPNLP
501: PFQKDPVGRL FEERSAFAHP VHGLGIPPLG IERPAPWLPQ GMRDVGGPMP LPDYPGGVPQ RRMGGFASGS QPVPITSVDV VVPRSLVPSI YGEDGGCLRH
601: IREISEAKIT ITEPRPEATE TVIIISGTPE QTHAAQSLIQ AFVLSETGSL DSTKP
101: SKFDGVPSSV VKALLLVFER IIEGEAENDD EDEANKKLSN VSARLLVLSN QVGCLLGKGG SVIKQMSADS GAQIRILPRD KLPLCASQQD EIVQLTGGVE
201: SVKKALHLVA QQLLDNPPRE RDLFPPMGSS GPSSHPFASG PRPEGVPPLN YHHPHQGPPF SNRPHHIADF HPSIGPPFPK FHESGPPLQP QLSPELITYR
301: LFCSSDKVGS VIGKGGNIVK ALQNDTGCEI KVLETTPESD DRIIVISGLA LPSDRIAPVQ DAVLRVQHRL VMAVPDAKDS TVLSRLLVAS NQTGCLLGKG
401: GAIIAEMRKL SGAHIRILGK DQIPKGVPEN DEVVQISGEF GAVQEALLQI TSRLKHHVFR DKLSAMNPNA PPAFIEQLPP YGLYMGRRES SPSRLYPNLP
501: PFQKDPVGRL FEERSAFAHP VHGLGIPPLG IERPAPWLPQ GMRDVGGPMP LPDYPGGVPQ RRMGGFASGS QPVPITSVDV VVPRSLVPSI YGEDGGCLRH
601: IREISEAKIT ITEPRPEATE TVIIISGTPE QTHAAQSLIQ AFVLSETGSL DSTKP
001: MEFSTSKRPA TTATAAESVH FRLLCPATRT GAIIGKGGSV IRHLQSVTGS KIRVIDDIPV PSEERVVLII APSGKKKDES NVCDSENPGS EEPKQEKGSE
101: CAGTSGGDDE EAPSSAQMAL LRVFERIVFG DDAATVDGDE LDKGESEGLC RMIVRGNQVD YLMSKGGKMI QKIREDSGAI VRISSTDQIP PCAFPGDVVI
201: QMNGKFSSVK KALLLVTNCL QESGAPPTWD ECPFPQPGYP PEYHSMEYHP QWDHPPPNPM PEDVGPFNRP VVEEEVAFRL LCPADKVGSL IGKGGAVVRA
301: LQNESGASIK VSDPTHDSEE RIIVISAREN LERRHSLAQD GVMRVHNRIV EIGFEPSAAV VARLLVHSPY IGRLLGKGGH LISEMRRATG ASIRVFAKDQ
401: ATKYESQHDE IVQVIGNLKT VQDALFQILC RLREAMFPGR LPFQGMGGPP PPFMGPYPEP PPPFGPRQYP ASPDRYHSPV GPFHERHCHG PGFDRPPGPG
501: FDRPPSPMSW TPQPGIDGHP GGMVPPDVNH GFALRNEPIG SENPVMTSAN VEIVIPQAYL GHVYGENCSN LNYIKQVSGA NVVVHDPKAG TTEGLVVVSG
601: TSDQAHFAQS LLHAFILCGQ S
101: CAGTSGGDDE EAPSSAQMAL LRVFERIVFG DDAATVDGDE LDKGESEGLC RMIVRGNQVD YLMSKGGKMI QKIREDSGAI VRISSTDQIP PCAFPGDVVI
201: QMNGKFSSVK KALLLVTNCL QESGAPPTWD ECPFPQPGYP PEYHSMEYHP QWDHPPPNPM PEDVGPFNRP VVEEEVAFRL LCPADKVGSL IGKGGAVVRA
301: LQNESGASIK VSDPTHDSEE RIIVISAREN LERRHSLAQD GVMRVHNRIV EIGFEPSAAV VARLLVHSPY IGRLLGKGGH LISEMRRATG ASIRVFAKDQ
401: ATKYESQHDE IVQVIGNLKT VQDALFQILC RLREAMFPGR LPFQGMGGPP PPFMGPYPEP PPPFGPRQYP ASPDRYHSPV GPFHERHCHG PGFDRPPGPG
501: FDRPPSPMSW TPQPGIDGHP GGMVPPDVNH GFALRNEPIG SENPVMTSAN VEIVIPQAYL GHVYGENCSN LNYIKQVSGA NVVVHDPKAG TTEGLVVVSG
601: TSDQAHFAQS LLHAFILCGQ S
Arabidopsis Description
At1g51580 [Source:UniProtKB/TrEMBL;Acc:Q9C553]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.