Factsheet for GSMUA_Achr2P15270_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
PTS1:	peroxisome
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P18410_001
GSMUA_Achr1P19650_001
GSMUA_Achr2P12550_001
GSMUA_Achr4P04810_001
GSMUA_Achr4P22370_001
GSMUA_Achr4P28550_001
GSMUA_Achr6P32500_001
GSMUA_Achr7P05560_001
GSMUA_Achr7P20530_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53060.1	GSMUA_Achr4P04810_001	AT3G60360.1	21798944
AT5G53060.1	GSMUA_Achr6P32500_001	AT3G60360.1	21798944
AT5G53060.1	GSMUA_Achr1P18410_001	AT4G24680.1	21798944
AT5G53060.1	GSMUA_Achr7P05560_001	AT4G24680.1	21798944
AT5G53060.1	GSMUA_Achr2P12550_001	AT5G04280.1	21798944
AT5G53060.1	GSMUA_Achr4P22370_001	AT5G04280.1	21798944
AT5G53060.1	GSMUA_Achr4P28550_001	AT5G04280.1	21798944
AT5G53060.1	GSMUA_Achr1P19650_001	AT5G06770.1	21798944
AT5G53060.1	GSMUA_Achr7P20530_001	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G082230.1	Barley	nucleus	55.83	61.98
Os06t0342500-01	Rice	cytosol	58.85	61.78
TraesCS7A01G333800.1	Wheat	nucleus	58.85	61.23
TraesCS7D01G341400.1	Wheat	nucleus	58.85	60.77
KXG20038	Sorghum	nucleus	57.7	60.03
Zm00001d046033_P001	Maize	nucleus	57.55	59.97
KRH53532	Soybean	nucleus	55.11	59.2
KRH64403	Soybean	nucleus	54.39	58.7
TraesCS7B01G245400.2	Wheat	nucleus	58.85	57.61
VIT_16s0098g01660.t01	Wine grape	nucleus	54.53	57.34
Solyc03g082980.2.1	Tomato	nucleus	52.95	55.09
PGSC0003DMT400047665	Potato	nucleus	52.37	53.06
Zm00001d037055_P003	Maize	nucleus	56.12	52.7
AT5G53060.1	Thale cress	nucleus	48.49	51.69
CDX96185	Canola	nucleus	47.34	51.33
Bra003085.1-P	Field mustard	nucleus	46.62	50.7
CDY56908	Canola	nucleus	46.19	50.47
CDY49453	Canola	nucleus	46.19	50.0
Bra022624.1-P	Field mustard	nucleus	47.48	49.92
CDY27030	Canola	nucleus	47.48	49.62
GSMUA_Achr7P11520_001	Banana	mitochondrion, nucleus	22.3	29.25
GSMUA_Achr6P10750_001	Banana	nucleus	21.73	28.38
GSMUA_Achr6P13890_001	Banana	cytosol	26.62	28.24
GSMUA_Achr10P...	Banana	cytosol	25.61	26.89
GSMUA_Achr6P03670_001	Banana	cytosol, nucleus, plastid	23.6	25.19
GSMUA_Achr10P...	Banana	nucleus	24.17	24.93
GSMUA_Achr3P21030_001	Banana	nucleus	23.45	24.47
GSMUA_Achr9P18150_001	Banana	endoplasmic reticulum, golgi	22.45	22.58
GSMUA_Achr7P01590_001	Banana	nucleus	13.38	21.14
GSMUA_Achr5P03200_001	Banana	cytosol	6.47	16.98
GSMUA_Achr8P14980_001	Banana	cytosol	11.22	13.93
GSMUA_Achr11P...	Banana	mitochondrion	10.79	13.09

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0006139	GO:GO:0006412	GO:GO:0006950	GO:GO:0006970	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009628
GO:GO:0009719	GO:GO:0009867	GO:GO:0009987	GO:GO:0010286	GO:GO:0010445	GO:GO:0010468
GO:GO:0019538	GO:GO:0031053	GO:GO:0040029	GO:GO:0070878	GO:GO:1900150	EnsemblPlantsGene:GSMUA_Achr2G15270_001
EnsemblPlants:GSMUA_Achr2P15270_001	EnsemblPlants:GSMUA_Achr2T15270_001	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
UniProt:M0S868	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF134	SMART:SM00322
SUPFAM:SSF101447	SUPFAM:SSF54791	UniParc:UPI000296829D	SEG:seg	:	:

Description

Putative KH domain-containing protein At4g18375 [Source:GMGC_GENE;Acc:GSMUA_Achr2G15270_001]

Coordinates

chr2:-:16644080..16649226

Molecular Weight (calculated)

75461.6 Da

IEP (calculated)

5.897

GRAVY (calculated)

-0.543

Length

695 amino acids

Sequence
(BLAST)

001: MERSRSKRSY HYDPDAHSQS PPPRSKPRYD GGGGGHHRRG NHHRRSGDRR GPPPPPPPPP PPPPPALPSS SAPSPSHKAQ DGSPHPGAVT TFFRILCPDA
101: KVGGVIGKYG SIIKAFRQDT GAWINVHQLA PDDDERIIET SDDRRREPDG RPPQYSPAEE ALLLIHERIV DADFEFGGGN EEGYGGGGWG GGVRDRGRLT
201: TRLVVPRSHV GCLLGKGGKI IEQMRNETKT HIRILPRDQY TPRCVSDTEE IVQVVGEGNC VKKAVAIILS RLKESLHRDR GPFRGRVYSP ERYDEFVNNT
301: QHISAVEESY LASRSSSGLD RARNNSYGSL PPGYSFDSDG NPVNDHSQAF PCEDLVFRIL CPHDKVERVI GVTDGIIEML RADIGVDVSV ADPIPGSDEC
401: IITITSEEGP DDDLFPAQEA LLHIQTHIVD LGPDKDNIIT TRLLVPASEV ALLEGMDGSL SDIRRLTCAN IQILPKEDLP PCAMEADELV QIVGEIRAAR
501: NALVQVTAKL RDYLYRDNSV PRDALPPSIS APVHAVTGTG RDSNSPVKVS TSEAYQGGDP QAEVYQSIHA TIGTWLPKDS GGCPSGSSEQ KESNASDEVR
601: PSSVRRFNVP LVTKSTLEVI IPEHAVPSLI MRSGSKLAQI SEISGAAVTL IEDRPEQTGK IVQISGSPEQ AEKAQSLLLG FILSTQDDIP SNQSK

Best Arabidopsis Sequence Match ( AT5G53060.1 )
(BLAST)

001: MERSRSKRNY HYDQDYDGDS MPRSKPRYNN NYHFGGGGGG NNRYRGGGGG GGGNGRPSKS HPETMATTTY RILCHDAKAG GVIGKSGTII KSIRQHTGAW
101: INVHELVPGD AERIIEISDN RRRDPDGRMP SFSPAQEALF SVHDRILESE AQFGYGGPPP EEEEDYGGVR PGGGRVVTRL VVSRMHVGCL LGKGGKIIEQ
201: MRIETKTHIR ILPRESNLPR CVSLSEEIVQ IVGELNAVKN ALAIVSSRLR ESQHRDRSNF QGRSHSPERS FAAAGDDYMP QLRRQSSDRF PRGNFRNNNF
301: SSRQSNYAEE APAVPVGENV YSEELVFQIL CPADKIVRVV GESQGIIDLL QNEIGVDVRV SDPVAGSDEQ IITISSEEAP DDPFFPAQEA LLHIQTQIID
401: LIPDKDNLIT TRLLVPSRDS ICLEGKAGSV SEISRLTGTS VQILAREEIP RCASINDVVI QITGEIRAAR EALVELTLLL RSHMFKELSQ KETPPASTST
501: TGPLEGVAGV MEVASSNNTI QSREGPTSSN LNLQQVSTIL PQFKEGFGSV AKAGESEHRE EVPVTTSRMA VPLVTRSTLE VVLPEAVVPK LVTKSRNKLA
601: QISEWSGASV TIVEDRPEET QNIIRISGTP EQAERAQSLL QGFILSIQED GP

Arabidopsis Description

RCF3RNA-binding KH domain-containing protein RCF3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.