Factsheet for GSMUA_Achr7P01590_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P03200_001	Banana	cytosol	47.05	78.11
KRG97000	Soybean	nucleus	62.27	61.44
KRH68752	Soybean	cytoskeleton, cytosol, nucleus	61.59	61.17
Bra001111.1-P	Field mustard	cytosol	53.86	60.77
Solyc01g097010.2.1	Tomato	nucleus	50.0	60.61
Solyc06g084000.2.1	Tomato	nucleus	31.36	58.23
VIT_14s0081g00440.t01	Wine grape	cytosol	66.59	57.34
Os03t0627500-01	Rice	cytosol	66.14	57.06
VIT_07s0141g00800.t01	Wine grape	cytosol	55.91	56.81
TraesCS4B01G069700.1	Wheat	nucleus	64.32	55.38
Zm00001d030968_P006	Maize	extracellular	63.18	54.72
EES16283	Sorghum	cytosol	62.95	54.42
TraesCS4D01G068400.1	Wheat	nucleus	63.41	54.28
TraesCS5A01G059500.1	Wheat	cytosol	64.09	54.23
TraesCS5B01G066800.1	Wheat	nucleus	64.09	54.23
TraesCS5D01G071000.1	Wheat	nucleus	63.86	54.14
TraesCS4A01G245800.1	Wheat	nucleus	63.41	53.14
HORVU4Hr1G011610.11	Barley	cytoskeleton, cytosol, nucleus	62.5	50.74
Solyc09g066120.2.1	Tomato	nucleus	56.59	50.61
PGSC0003DMT400051262	Potato	nucleus	57.73	50.6
PGSC0003DMT400051668	Potato	cytosol	58.64	50.39
OQU91315	Sorghum	plastid	51.82	46.91
KRH71306	Soybean	nucleus	51.59	45.86
CDY40663	Canola	cytosol	58.64	45.83
CDX74180	Canola	cytosol	58.41	45.65
CDY64706	Canola	nucleus	41.36	45.05
KRH67322	Soybean	nucleus	54.09	44.99
AT3G04610.2	Thale cress	cytosol	58.41	44.54
KRG95633	Soybean	nucleus	54.09	44.32
KRH32136	Soybean	cytosol	56.36	43.89
Zm00001d013712_P003	Maize	cytosol, plastid, vacuole	63.86	42.77
Os12t0597600-01	Rice	cytosol	13.18	34.94
GSMUA_Achr8P14980_001	Banana	cytosol	42.95	33.75
GSMUA_Achr11P...	Banana	mitochondrion	42.95	32.98
Solyc06g084010.2.1	Tomato	nucleus	23.41	31.89
GSMUA_Achr7P11520_001	Banana	mitochondrion, nucleus	24.55	20.38
GSMUA_Achr6P10750_001	Banana	nucleus	22.95	18.98
GSMUA_Achr6P13890_001	Banana	cytosol	21.59	14.5
GSMUA_Achr10P...	Banana	nucleus	21.82	14.24
GSMUA_Achr6P03670_001	Banana	cytosol, nucleus, plastid	20.91	14.13
GSMUA_Achr3P21030_001	Banana	nucleus	21.36	14.11
GSMUA_Achr10P...	Banana	cytosol	20.68	13.75
GSMUA_Achr2P15270_001	Banana	nucleus	21.14	13.38
GSMUA_Achr9P18150_001	Banana	endoplasmic reticulum, golgi	20.91	13.31

Protein Annotations

EnsemblPlants:GSMUA_Achr7P01590_001	EnsemblPlants:GSMUA_Achr7T01590_001	EnsemblPlantsGene:GSMUA_Achr7G01590_001	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sf	PANTHER:PTHR10288	PANTHER:PTHR10288:SF224	PFAM:PF00013	PFscan:PS50084	SEG:seg
SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI000296D8AE	UniProt:M0TDU9	MapMan:35.1	:

Description

Putative Poly(rC)-binding protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G01590_001]

Coordinates

chr7:-:1253746..1265155

Molecular Weight (calculated)

46785.4 Da

IEP (calculated)

5.715

GRAVY (calculated)

-0.422

Length

440 amino acids

Sequence
(BLAST)

001: MDDIEENVVE EEVPVESGNS HEVKQETDGQ LEAESGEKKW PGWPGESVFR ILIPAHKVGS LIGRKGEFIK RMCEESRARI KILEGPPGVP ERAVMISAKE
101: EPDASISPAM DGLLRVHKRI IDGLDGESGH APSGAGNTAA TRLLVAATQA GSLIGKQGAT IKSIQEASNS IVRILENLPP VALSDDRVVE IQGEPTGMHK
201: AVELIATHLR KFLVDRSVLP LFEKRVSLPN MHLEQNMPPP QPWGHPPGLP PSAGGSAYGG NPQFMPPRAH DNFYPPPDLP PLEKQPHQGI SMYGQNAPPM
301: GVHSANQQAS SMISQVTQHM QIPLSYADAV IGEAGANISY IRRASGATIT IQETRGVPGE MTVEITGSAS QVQTAQQLIQ NFMAAAPSPA PSQSSMGSMD
401: PGYNSYQPHG PMYGSPPSNT GPVAHSGGGY GSTYGGSYGY

Best Arabidopsis Sequence Match ( AT3G04610.4 )
(BLAST)

001: MAEAEDQQNF VAHNGDQVPD QGSDELHNGL PYQVHDETLV HQPYEVEDPI LEPQQYEVDD QLEYHQYQLQ DQANEDVQDH SQDDLQYQPQ NQEQFQLQDE
101: AHDQAQYQAQ GDVQDHNGDE VQDKVEDEEG IPEHLESLQK SEPEEDATVG GEEKRWPGWP GETVFRMLVP AQKVGSIIGR KGDVIKKIVE ETRARIKILD
201: GPPGTTERAV MVSGKEEPES SLPPSMDGLL RVHMRIVDGL DGEASQAPPP SKVSTRLLVP ASQAGSLIGK QGGTVKAIQE ASACIVRVLG SEDLPVFALQ
301: DDRVVEVVGE PTSVHRALEL IASHLRKFLV DRSIIPFFEN QMQKPTRQMD HMPPPHQSWG PPQGHAPSVG GGGYGHNPPP YMQPPPRHDS YYPPPEMRQP
401: PMEKQPHQGI SAYGREPPMN VHVSSAPPMV AQQVTQQMQI PLSYADAVIG TSGSNISYTR RLSGATVTIQ ETRGVPGEMT VEVSGTGSQV QTAVQLIQNF
501: MAEAGAPAPA QPQTVAPEQQ GYNPYATHGS VYAAAPTNPP GGYATDYSSG YGY

Arabidopsis Description

FLKFlowering locus K homology domain [Source:UniProtKB/Swiss-Prot;Acc:Q9SR13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.