Factsheet for TraesCS4D01G068400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G069700.1	Wheat	nucleus	96.3	96.87
TraesCS4A01G245800.1	Wheat	nucleus	96.11	94.1
HORVU4Hr1G011610.11	Barley	cytoskeleton, cytosol, nucleus	92.61	87.82
Os03t0627500-01	Rice	cytosol	78.02	78.63
TraesCS5D01G071000.1	Wheat	nucleus	66.15	65.51
OQU91315	Sorghum	plastid	61.87	65.43
GSMUA_Achr7P01590_001	Banana	nucleus	54.28	63.41
GSMUA_Achr5P03200_001	Banana	cytosol	31.32	60.75
Zm00001d013712_P003	Maize	cytosol, plastid, vacuole	74.9	58.6
Bra001111.1-P	Field mustard	cytosol	43.39	57.18
KRH68752	Soybean	cytoskeleton, cytosol, nucleus	48.25	55.98
KRG97000	Soybean	nucleus	48.05	55.38
Solyc01g097010.2.1	Tomato	nucleus	38.91	55.1
VIT_14s0081g00440.t01	Wine grape	cytosol	52.53	52.84
VIT_07s0141g00800.t01	Wine grape	cytosol	44.36	52.66
Solyc06g084000.2.1	Tomato	nucleus	23.35	50.63
PGSC0003DMT400051262	Potato	nucleus	47.47	48.61
Solyc09g066120.2.1	Tomato	nucleus	46.5	48.58
PGSC0003DMT400051668	Potato	cytosol	47.67	47.85
CDY64706	Canola	nucleus	35.8	45.54
KRH71306	Soybean	nucleus	43.0	44.65
KRH67322	Soybean	nucleus	45.91	44.61
KRG95633	Soybean	nucleus	46.5	44.51
CDX74180	Canola	cytosol	47.86	43.69
AT3G04610.2	Thale cress	cytosol	49.03	43.67
CDY40663	Canola	cytosol	47.67	43.52
KRH32136	Soybean	cytosol	46.11	41.95
TraesCS1D01G218700.1	Wheat	cytosol	33.66	38.44
Solyc06g084010.2.1	Tomato	nucleus	21.21	33.75
TraesCS1D01G134700.1	Wheat	cytosol	32.1	27.5
TraesCS4D01G160700.2	Wheat	nucleus	18.68	17.05
TraesCS5D01G538200.3	Wheat	nucleus	18.09	14.76
TraesCS3D01G519700.1	Wheat	nucleus	18.09	14.74
TraesCS3D01G166400.1	Wheat	cytosol, mitochondrion, nucleus	19.07	13.9
TraesCS7D01G341400.1	Wheat	nucleus	17.51	13.37
TraesCS1D01G161200.3	Wheat	nucleus	19.26	11.9
TraesCS5D01G284200.4	Wheat	plastid	13.81	11.32

Protein Annotations

EnsemblPlants:TraesCS4D01G068400.1	EnsemblPlantsGene:TraesCS4D01G068400	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
PANTHER:PTHR10288	PANTHER:PTHR10288:SF224	PFAM:PF00013	PFscan:PS50084	SEG:seg	SMART:SM00322
SUPFAM:SSF54791	TIGR:cd00105	TIGR:cd02396	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr4D:-:43644187..43652458

Molecular Weight (calculated)

55434.4 Da

IEP (calculated)

4.560

GRAVY (calculated)

-0.710

Length

514 amino acids

Sequence
(BLAST)

001: MDEENFTEHG IGELPQNLYD EEQLNSFDNT VQYNEEPGDP YKDEEPGNQY DEGAGNAYNE VQANLLSEEP ETQYDDEPAN PYQEENAYNG EVKQQESLQV
101: EGDDKRWPGW PGDSVFRILV PAQKVGAIIG RKGEFIKRMC EESKARIKIL DGPPGATERA VIISAKDEPD EPISPAMDGL LKIHKRITDG SDGESGQLQR
201: GASNVGPTRL LVPASQAGSL IGKQGATIKS IQDSSKSVVR IVENVPPVAL NDDRVVEIQG EPLGVHKAVE LIASHLRKFL VDHSVLQLFE QQMKMHSVQR
301: EQPMAAPQHW APPQPWVPPP NLPPGGPGYG ENPQFMPPRP QDNYYPRPDV PPMEKQPHYG ISAYGREAPP SGTSGNQPPL HVASQVHNMQ IPLSYADAVI
401: GAAGASISYI RRHSGAAVTI QESRGAPGEM TVEIIGSASQ VQTAQQLIQN FMAEAAPQTR PPASNPPAPP VDPGYSSYPP PPYGAPPTGA GGPAPHNGGG
501: YGGGSGSYHP SYGY

Best Arabidopsis Sequence Match ( AT3G04610.1 )
(BLAST)

001: MAEAEDQQNF VAHNGDQVPD QGSDELHNGL PYQVHDETLV HQPYEVEDPI LEPQQYEVPD PTLEPQQYEV PDQTLEPQQY EVDDQLEYHQ YQLQDQANED
101: VQDHSQDDLQ YQPQNQEQFQ LQDEAHDQAQ YQAQGDVQDH NGDEVQDKVE DEEGIPEHLE SLQKSEPEED ATVGGEEKRW PGWPGETVFR MLVPAQKVGS
201: IIGRKGDVIK KIVEETRARI KILDGPPGTT ERAVMVSGKE EPESSLPPSM DGLLRVHMRI VDGLDGEASQ APPPSKVSTR LLVPASQAGS LIGKQGGTVK
301: AIQEASACIV RVLGSEDLPV FALQDDRVVE VVGEPTSVHR ALELIASHLR KFLVDRSIIP FFENQMQKPT RQMDHMPPPH QSWGPPQGHA PSVGGGGYGH
401: NPPPYMQPPP RHDSYYPPPE MRQPPMEKQP HQGISAYGRE PPMNVHVSSA PPMVAQQVTQ QMQIPLSYAD AVIGTSGSNI SYTRRLSGAT VTIQETRGVP
501: GEMTVEVSGT GSQVQTAVQL IQNFMAEAGA PAPAQPQTVA PEQQGYNPYA THGSVYAAAP TNPPGGYATD YSSGYGY

Arabidopsis Description

FLKFlowering locus K homology domain [Source:UniProtKB/Swiss-Prot;Acc:Q9SR13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.