Factsheet for Zm00001d013712_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid, vacuole
Any Predictor:	cytosol, mitochondrion, plastid, vacuole
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU91315	Sorghum	plastid	63.17	85.39
TraesCS4B01G069700.1	Wheat	nucleus	59.21	76.13
Os03t0627500-01	Rice	cytosol	58.45	75.29
TraesCS4D01G068400.1	Wheat	nucleus	58.6	74.9
TraesCS4A01G245800.1	Wheat	nucleus	58.6	73.33
HORVU4Hr1G011610.11	Barley	cytoskeleton, cytosol, nucleus	57.84	70.11
Zm00001d030968_P006	Maize	extracellular	50.53	65.35
GSMUA_Achr7P01590_001	Banana	nucleus	42.77	63.86
GSMUA_Achr5P03200_001	Banana	cytosol	24.35	60.38
Bra001111.1-P	Field mustard	cytosol	33.94	57.18
KRG97000	Soybean	nucleus	37.75	55.61
KRH68752	Soybean	cytoskeleton, cytosol, nucleus	37.44	55.53
Solyc01g097010.2.1	Tomato	nucleus	30.29	54.82
VIT_14s0081g00440.t01	Wine grape	cytosol	42.16	54.21
VIT_07s0141g00800.t01	Wine grape	cytosol	34.4	52.19
Solyc06g084000.2.1	Tomato	nucleus	17.96	49.79
PGSC0003DMT400051262	Potato	nucleus	35.62	46.61
Solyc09g066120.2.1	Tomato	nucleus	34.86	46.54
PGSC0003DMT400051668	Potato	cytosol	36.07	46.29
KRH67322	Soybean	nucleus	36.38	45.18
KRH71306	Soybean	nucleus	33.79	44.85
KRG95633	Soybean	nucleus	36.53	44.69
CDY64706	Canola	nucleus	26.94	43.81
CDX74180	Canola	cytosol	36.68	42.81
AT3G04610.2	Thale cress	cytosol	37.14	42.29
CDY40663	Canola	cytosol	36.23	42.27
KRH32136	Soybean	cytosol	36.23	42.12
Zm00001d029973_P001	Maize	plasma membrane	26.48	38.84
Zm00001d000030_P001	Maize	cytosol, extracellular, nucleus, plasma membrane	26.03	38.78
Solyc06g084010.2.1	Tomato	nucleus	16.13	32.82
Zm00001d015093_P001	Maize	cytosol	21.31	29.91
Zm00001d003290_P002	Maize	mitochondrion	10.2	29.26
Zm00001d014180_P004	Maize	cytosol	24.51	24.88
Zm00001d010815_P001	Maize	mitochondrion	10.96	20.57
Zm00001d029328_P002	Maize	nucleus	16.74	20.33
Zm00001d049390_P001	Maize	nucleus	13.55	14.1
Zm00001d024270_P001	Maize	nucleus	13.39	13.92
Zm00001d046033_P001	Maize	nucleus	13.39	13.19
Zm00001d009014_P004	Maize	nucleus	13.85	12.91
Zm00001d037055_P003	Maize	nucleus	13.24	11.76
Zm00001d013963_P002	Maize	nucleus	14.31	11.52
Zm00001d006055_P002	Maize	plastid	10.05	10.58
Zm00001d019538_P002	Maize	plastid	10.65	10.37
Zm00001d032597_P006	Maize	golgi, plasma membrane	15.37	10.24

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	UniProt:A0A1D6GLL3	ProteinID:AQK64209.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF224	SMART:SM00322
SUPFAM:SSF54791	UniParc:UPI0008444870	EnsemblPlantsGene:Zm00001d013712	EnsemblPlants:Zm00001d013712_P003	EnsemblPlants:Zm00001d013712_T003	SEG:seg

Description

Nucleic acid binding protein

Coordinates

chr5:-:18266523..18272776

Molecular Weight (calculated)

71079.1 Da

IEP (calculated)

5.032

GRAVY (calculated)

-0.553

Length

657 amino acids

Sequence
(BLAST)

001: MTHCSVWIPT VTPKPSIFLP DHKDQAPQKI IVLTESVKWS SAINTLLDIG SRCKSTYLFE SGVRCGLHER SSSTPRTRIS RSDPQARLSL RRQFLAGVLP
101: ASPFIPSSDF SCLWLELMDG QVETFVGDEE GGSPQVPYDG EQPTLYDSVA KQYSEELGDQ YNEQPRAQYD EGSGNPYNDY EEQANLYSEE TGNRYNEDPA
201: DSYQEEQENA FSGGINQQDN LQVNNVDDNK WPGWPGESVF RILVPAQKVG AIIGRKGEFI KKMCEETKAR IKILDGPPGV PERAVSAFME FVMISAKDEP
301: DAPLSPAMDG LLRVHKRITD SSDGESSQPQ RSAGNIGPTR LLVPSSQAGS LIGKQGATIK SIQDSSKSIV RIVENVPPVA LNDDRVVEIQ GEPLGVQEAV
401: ELISSHLRKF LVDRSVLPLF EAHASFLFHM KMHGMPREQP VPPPQHWGPP QTWIRPPNIP PGGPGFGGNP QFMHPRPQDS YYPSPDVPHM EKQPHYGISA
501: YGREAPPSGA SATGNQPPSH AGSQVAHDMH IPLAYADAVI GAAGASISYI RRHSGATVTI QESRGAPGEM TVEITGTAAQ VQTAQQLIQN FMAEAAPPPP
601: GPAPASNPPA PPVDPSYGSY PPPYGAAPSY GSSAAAGPPQ YNGGNYGGPT YPPSYGY

Best Arabidopsis Sequence Match ( AT3G04610.4 )
(BLAST)

001: MAEAEDQQNF VAHNGDQVPD QGSDELHNGL PYQVHDETLV HQPYEVEDPI LEPQQYEVDD QLEYHQYQLQ DQANEDVQDH SQDDLQYQPQ NQEQFQLQDE
101: AHDQAQYQAQ GDVQDHNGDE VQDKVEDEEG IPEHLESLQK SEPEEDATVG GEEKRWPGWP GETVFRMLVP AQKVGSIIGR KGDVIKKIVE ETRARIKILD
201: GPPGTTERAV MVSGKEEPES SLPPSMDGLL RVHMRIVDGL DGEASQAPPP SKVSTRLLVP ASQAGSLIGK QGGTVKAIQE ASACIVRVLG SEDLPVFALQ
301: DDRVVEVVGE PTSVHRALEL IASHLRKFLV DRSIIPFFEN QMQKPTRQMD HMPPPHQSWG PPQGHAPSVG GGGYGHNPPP YMQPPPRHDS YYPPPEMRQP
401: PMEKQPHQGI SAYGREPPMN VHVSSAPPMV AQQVTQQMQI PLSYADAVIG TSGSNISYTR RLSGATVTIQ ETRGVPGEMT VEVSGTGSQV QTAVQLIQNF
501: MAEAGAPAPA QPQTVAPEQQ GYNPYATHGS VYAAAPTNPP GGYATDYSSG YGY

Arabidopsis Description

FLKFlowering locus K homology domain [Source:UniProtKB/Swiss-Prot;Acc:Q9SR13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.