CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67322	Soybean	nucleus	93.85	95.27
KRH71306	Soybean	nucleus	70.58	76.57
KRH32136	Soybean	cytosol	78.4	74.51
Solyc06g084000.2.1	Tomato	nucleus	27.93	63.29
VIT_07s0141g00800.t01	Wine grape	cytosol	50.65	62.82
KRH68752	Soybean	cytoskeleton, cytosol, nucleus	48.23	58.47
KRG97000	Soybean	nucleus	48.04	57.85
PGSC0003DMT400051668	Potato	cytosol	55.12	57.81
Solyc09g066120.2.1	Tomato	nucleus	52.51	57.32
PGSC0003DMT400051262	Potato	nucleus	53.45	57.17
GSMUA_Achr7P01590_001	Banana	nucleus	44.32	54.09
GSMUA_Achr5P03200_001	Banana	cytosol	25.7	52.08
Os03t0627500-01	Rice	cytosol	44.51	46.86
TraesCS4B01G069700.1	Wheat	nucleus	44.32	46.58
TraesCS4D01G068400.1	Wheat	nucleus	44.51	46.5
EES16283	Sorghum	cytosol	43.2	45.58
TraesCS4A01G245800.1	Wheat	nucleus	44.32	45.33
TraesCS5B01G066800.1	Wheat	nucleus	43.58	45.0
TraesCS5D01G071000.1	Wheat	nucleus	43.39	44.89
Zm00001d030968_P006	Maize	extracellular	42.27	44.69
TraesCS5A01G059500.1	Wheat	cytosol	43.2	44.62
HORVU4Hr1G011610.11	Barley	cytoskeleton, cytosol, nucleus	44.69	44.28
OQU91315	Sorghum	plastid	37.99	41.98
KRH02776	Soybean	nucleus	32.59	40.14
KRH19104	Soybean	nucleus	32.59	40.14
Solyc06g084010.2.1	Tomato	nucleus	23.65	39.32
HORVU1Hr1G036300.1	Barley	cytosol	13.04	38.46
KRH12329	Soybean	cytosol, nucleus	31.28	38.01
KRH37335	Soybean	cytosol, nucleus	30.91	37.47
Zm00001d013712_P003	Maize	cytosol, plastid, vacuole	44.69	36.53
Os12t0597600-01	Rice	cytosol	10.24	33.13
KRH58152	Soybean	cytosol	7.82	33.07
Zm00001d003290_P002	Maize	mitochondrion	12.66	29.69
EER94248	Sorghum	nucleus	29.8	27.21
TraesCS1A01G136600.1	Wheat	cytosol, mitochondrion, nucleus	29.61	26.54
TraesCS1D01G134700.1	Wheat	cytosol	29.42	26.33
TraesCS1B01G155000.1	Wheat	cytosol, mitochondrion, nucleus	29.24	26.21
Zm00001d014180_P004	Maize	cytosol	29.98	24.88
Os10t0414700-01	Rice	nucleus	28.31	24.4
KRH00973	Soybean	nucleus, plastid	16.39	24.31
KRH40252	Soybean	cytosol, golgi, nucleus, plastid	16.76	23.2
HORVU1Hr1G036280.1	Barley	cytosol	16.57	21.71
Zm00001d010815_P001	Maize	mitochondrion	13.78	21.14
KRH01196	Soybean	nucleus	20.3	20.07
KRH40065	Soybean	nucleus	20.11	20.0
KRH18467	Soybean	nucleus	19.18	18.8
KRG93559	Soybean	nucleus	18.81	18.43
KRH58669	Soybean	endoplasmic reticulum, nucleus	17.88	15.46
KRH49838	Soybean	plastid	16.95	15.42
KRH42077	Soybean	plastid	16.57	15.16
KRH42565	Soybean	nucleus	17.5	15.04
KRH62129	Soybean	plastid	16.39	12.98
KRH44614	Soybean	mitochondrion, nucleus	13.41	12.74
KRH53532	Soybean	nucleus	15.27	12.67
KRH64403	Soybean	nucleus	15.08	12.58
KRH52837	Soybean	plastid	15.83	12.57
KRH21739	Soybean	plastid	16.57	12.45
KRH47290	Soybean	mitochondrion, nucleus	12.48	11.99
KRH39475	Soybean	plastid	13.59	11.95
KRH10613	Soybean	plastid	15.83	11.69
KRH74462	Soybean	nucleus	13.41	11.69

Protein Annotations

EntrezGene:100799901	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	UniProt:A0A0R0EX89	EMBL:ACUP02012122
ncoils:Coil	EnsemblPlantsGene:GLYMA_19G162000	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EnsemblPlants:KRG95633	ProteinID:KRG95633
ProteinID:KRG95633.1	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF155	SMART:SM00322
SUPFAM:SSF54791	UniParc:UPI0006EE1416	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:42270024..42274845

Molecular Weight (calculated)

57114.7 Da

IEP (calculated)

4.750

GRAVY (calculated)

-0.426

Length

537 amino acids

Sequence
(BLAST)

001: MSNPKENILM AEHGFDGHDV GYVPEDPNFP QNHSDEHDVG TVIDSSGFPH LLPDEDDAGN LMEDANFPEN DFVGHEHDVG GLAGDADSPP EEHVEEVHGA
101: GDVPEDFDSL PKQGSEIDSK GNEIKKWPGW PGENVFRMLV PVQKVGSIIG RKGEFIKKIT EETKARIKIL DGPPGISERA VMVSAKEEPD CPIPPAVDGL
201: LRVHKQVINV DRDLADSALA AGRSVVTRLL VADTQAGSLI GKQGSTIKSI QDGSGCTIRV LGSENLPIFA LRDDSIVEIQ GESAGVHKAV ELIAVHLRKF
301: LVDRSIVGVF ETQMQMSDVR VNQNLPPHQN WGPPPQGFPA PAGGGGGGGP AFAPNHQYMP PSHHYDSYYP PTELPPMDKH LHQGPPPAYA RDASMGIHSS
401: SAQPQQSVVT KVTQHMQIPL TYADAVIGAS GTNISYIRRA SGASITIQET RGVPGEMTVE ISGTSSQIQA AQQLVQNFMA EAASATQDPM GGSVSQGYSA
501: YPTTAPVYAP PPTSAGGHTG HAPSADYGPV YGTNYGY

Best Arabidopsis Sequence Match ( AT3G04610.1 )
(BLAST)

001: MAEAEDQQNF VAHNGDQVPD QGSDELHNGL PYQVHDETLV HQPYEVEDPI LEPQQYEVPD PTLEPQQYEV PDQTLEPQQY EVDDQLEYHQ YQLQDQANED
101: VQDHSQDDLQ YQPQNQEQFQ LQDEAHDQAQ YQAQGDVQDH NGDEVQDKVE DEEGIPEHLE SLQKSEPEED ATVGGEEKRW PGWPGETVFR MLVPAQKVGS
201: IIGRKGDVIK KIVEETRARI KILDGPPGTT ERAVMVSGKE EPESSLPPSM DGLLRVHMRI VDGLDGEASQ APPPSKVSTR LLVPASQAGS LIGKQGGTVK
301: AIQEASACIV RVLGSEDLPV FALQDDRVVE VVGEPTSVHR ALELIASHLR KFLVDRSIIP FFENQMQKPT RQMDHMPPPH QSWGPPQGHA PSVGGGGYGH
401: NPPPYMQPPP RHDSYYPPPE MRQPPMEKQP HQGISAYGRE PPMNVHVSSA PPMVAQQVTQ QMQIPLSYAD AVIGTSGSNI SYTRRLSGAT VTIQETRGVP
501: GEMTVEVSGT GSQVQTAVQL IQNFMAEAGA PAPAQPQTVA PEQQGYNPYA THGSVYAAAP TNPPGGYATD YSSGYGY

Arabidopsis Description

FLKFlowering locus K homology domain [Source:UniProtKB/Swiss-Prot;Acc:Q9SR13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.