Factsheet for TraesCS1B01G155000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G136600.1	Wheat	cytosol, mitochondrion, nucleus	97.33	97.33
TraesCS1D01G134700.1	Wheat	cytosol	96.66	96.5
HORVU1Hr1G036280.1	Barley	cytosol	64.11	93.66
HORVU1Hr1G036300.1	Barley	cytosol	28.38	93.41
EER94248	Sorghum	nucleus	60.1	61.22
Os10t0414700-01	Rice	nucleus	60.43	58.11
Zm00001d014180_P004	Maize	cytosol	59.43	55.02
Zm00001d003290_P002	Maize	mitochondrion	18.7	48.91
KRH68752	Soybean	cytoskeleton, cytosol, nucleus	27.88	37.7
KRG97000	Soybean	nucleus	27.88	37.44
VIT_07s0141g00800.t01	Wine grape	cytosol	26.21	36.26
Bra001111.1-P	Field mustard	cytosol	22.37	34.36
Solyc01g097010.2.1	Tomato	nucleus	20.7	34.16
Zm00001d010815_P001	Maize	mitochondrion	19.7	33.71
VIT_14s0081g00440.t01	Wine grape	cytosol	28.71	33.66
TraesCS4B01G069700.1	Wheat	nucleus	27.38	32.09
TraesCS5B01G066800.1	Wheat	nucleus	27.71	31.92
TraesCS1B01G229900.1	Wheat	cytosol	23.71	31.63
Solyc09g066120.2.1	Tomato	nucleus	24.71	30.08
PGSC0003DMT400051668	Potato	cytosol	25.71	30.08
Solyc06g084000.2.1	Tomato	nucleus	11.85	29.96
PGSC0003DMT400051262	Potato	nucleus	25.04	29.88
KRH67322	Soybean	nucleus	26.04	29.49
KRG95633	Soybean	nucleus	26.21	29.24
KRH71306	Soybean	nucleus	23.87	28.89
CDY64706	Canola	nucleus	18.86	27.97
KRH32136	Soybean	cytosol	26.21	27.79
CDX74180	Canola	cytosol	25.38	27.0
CDY40663	Canola	cytosol	25.38	27.0
AT3G04610.2	Thale cress	cytosol	25.54	26.52
TraesCS6B01G113100.1	Wheat	cytosol	19.03	24.41
Solyc06g084010.2.1	Tomato	nucleus	11.85	21.98
TraesCS4B01G166500.2	Wheat	nucleus	16.86	17.94
TraesCS5B01G551800.1	Wheat	nucleus	15.36	14.58
TraesCS3B01G580700.1	Wheat	nucleus	14.52	13.79
TraesCS3B01G189700.1	Wheat	nucleus	15.19	12.85
TraesCS1B01G181000.3	Wheat	nucleus	15.86	11.3
TraesCS7B01G245400.2	Wheat	nucleus	12.85	10.85
TraesCS5B01G276400.1	Wheat	plastid	11.19	10.72

Protein Annotations

EnsemblPlants:TraesCS1B01G155000.1	EnsemblPlantsGene:TraesCS1B01G155000	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
PANTHER:PTHR10288	PANTHER:PTHR10288:SF152	PFAM:PF00013	PFscan:PS50084	SMART:SM00322	SUPFAM:SSF54791
TIGR:cd00105	TIGR:cd02396	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr1B:+:261841284..261846408

Molecular Weight (calculated)

65984.8 Da

IEP (calculated)

6.283

GRAVY (calculated)

-0.291

Length

599 amino acids

Sequence
(BLAST)

001: MLQCLVGMTE MQRNSAERWV TQMVRKSQKE ALGTVTGQDS TDDVGPGGDT TCSAGENRYP DWPGTTVFRM LISATKLGPI IGYKGERVRR LCEETKACIR
101: IIGGHLAGAE RAVIIFAKEQ PDELIPPAMD ALLRVYQHII YDDGLNMGSD STVVARILIP SEQAVSLIGE QGLMIYSIEE ASKTNIYVLD CDLPPVAIEE
201: DRIVEIWGQP ARVRKALELV ASHLRKYLVD RSVIPLFDPH VPLSMLHVEM PQCHYSDHPE GMPLLYYSDH PEGRLEAVSP LCHSDDHQRE PQWTETYYTR
301: CRNPVEAPTS FGRYRSVTPP HHCISVYGQE TSSPPKGTYL SAPIELGSHH NLTSYELRAT SPIGASATVE RIRSLISVHG HQAHPLRKTC QSATMGKRPH
401: LGISLYGSES HTSRVSPSAA ADLPTPCGMC EYELQASQSL RMYPPATVEN LLHCRVSACG PEAPSHVLVR PLTSKSPAIT AQVTEKMQVP IIYAEAVIGP
501: TGARIDYIRR ASRSSILIND LEEDAMSIEI NGSSATDVQT AEQLIKNFMA EAAAASPGHK FDSIPSYLPA PRSPQPDILR TSYIEKESGV AEQRLQTIY

Best Arabidopsis Sequence Match ( AT3G04610.1 )
(BLAST)

001: MAEAEDQQNF VAHNGDQVPD QGSDELHNGL PYQVHDETLV HQPYEVEDPI LEPQQYEVPD PTLEPQQYEV PDQTLEPQQY EVDDQLEYHQ YQLQDQANED
101: VQDHSQDDLQ YQPQNQEQFQ LQDEAHDQAQ YQAQGDVQDH NGDEVQDKVE DEEGIPEHLE SLQKSEPEED ATVGGEEKRW PGWPGETVFR MLVPAQKVGS
201: IIGRKGDVIK KIVEETRARI KILDGPPGTT ERAVMVSGKE EPESSLPPSM DGLLRVHMRI VDGLDGEASQ APPPSKVSTR LLVPASQAGS LIGKQGGTVK
301: AIQEASACIV RVLGSEDLPV FALQDDRVVE VVGEPTSVHR ALELIASHLR KFLVDRSIIP FFENQMQKPT RQMDHMPPPH QSWGPPQGHA PSVGGGGYGH
401: NPPPYMQPPP RHDSYYPPPE MRQPPMEKQP HQGISAYGRE PPMNVHVSSA PPMVAQQVTQ QMQIPLSYAD AVIGTSGSNI SYTRRLSGAT VTIQETRGVP
501: GEMTVEVSGT GSQVQTAVQL IQNFMAEAGA PAPAQPQTVA PEQQGYNPYA THGSVYAAAP TNPPGGYATD YSSGYGY

Arabidopsis Description

FLKFlowering locus K homology domain [Source:UniProtKB/Swiss-Prot;Acc:Q9SR13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.