Factsheet for TraesCS1B01G229900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G218700.1	Wheat	cytosol	98.89	98.67
TraesCS1A01G216900.1	Wheat	cytosol	98.22	98.0
HORVU1Hr1G055480.1	Barley	plastid	98.44	88.05
EER94472	Sorghum	cytosol	85.52	84.96
Zm00001d000030_P001	Maize	cytosol, extracellular, nucleus, plasma membrane	83.07	84.58
Os10t0564000-01	Rice	cytosol	85.75	84.06
Zm00001d029973_P001	Maize	plasma membrane	83.3	83.48
KRH19104	Soybean	nucleus	54.57	56.19
KRH02776	Soybean	nucleus	54.12	55.73
KRH37335	Soybean	cytosol, nucleus	52.56	53.27
VIT_11s0052g00030.t01	Wine grape	plastid	55.23	53.22
KRH12329	Soybean	cytosol, nucleus	52.12	52.94
Solyc07g008490.2.1	Tomato	nucleus	50.56	47.1
PGSC0003DMT400076105	Potato	plastid	46.99	45.67
Bra019133.1-P	Field mustard	cytosol	40.09	45.23
GSMUA_Achr8P14980_001	Banana	cytosol	55.23	44.29
Solyc05g041740.1.1	Tomato	plastid	20.27	43.33
AT4G26000.1	Thale cress	cytosol	47.44	43.03
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	45.66	42.71
GSMUA_Achr11P...	Banana	mitochondrion	54.12	42.41
CDY42768	Canola	cytosol	46.55	42.39
Solyc08g074330.1.1	Tomato	plastid	21.38	42.29
CDX92741	Canola	cytosol	46.33	42.19
TraesCS6B01G113100.1	Wheat	cytosol	41.65	40.04
Solyc05g043210.1.1	Tomato	plastid	22.27	39.53
PGSC0003DMT400046406	Potato	cytosol	50.56	38.47
Bra013940.1-P	Field mustard	cytosol	34.97	36.94
CDX89376	Canola	cytosol	34.97	36.94
CDY65294	Canola	cytosol	35.19	35.99
Solyc05g042180.1.1	Tomato	plastid	21.6	35.53
TraesCS4B01G069700.1	Wheat	nucleus	38.08	33.46
TraesCS5B01G066800.1	Wheat	nucleus	37.64	32.5
Solyc05g043200.1.1	Tomato	nucleus, peroxisome, plastid	22.27	31.25
TraesCS1B01G155000.1	Wheat	cytosol, mitochondrion, nucleus	31.63	23.71
TraesCS4B01G166500.2	Wheat	nucleus	20.94	16.7
TraesCS5B01G551800.1	Wheat	nucleus	20.49	14.58
TraesCS3B01G580700.1	Wheat	nucleus	20.27	14.42
TraesCS7B01G245400.2	Wheat	nucleus	19.15	12.11
TraesCS1B01G181000.3	Wheat	nucleus	22.05	11.77
TraesCS3B01G189700.1	Wheat	nucleus	18.49	11.72
TraesCS5B01G276400.1	Wheat	plastid	14.92	10.72

Protein Annotations

EnsemblPlants:TraesCS1B01G229900.1	EnsemblPlantsGene:TraesCS1B01G229900	Gene3D:3.30.1370.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PANTHER:PTHR10288
PANTHER:PTHR10288:SF132	PFAM:PF00013	PFscan:PS50084	SEG:seg	SMART:SM00322	SUPFAM:SSF54791
TIGR:cd00105	TIGR:cd02396	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr1B:-:412895774..412899786

Molecular Weight (calculated)

47936.7 Da

IEP (calculated)

5.326

GRAVY (calculated)

-0.245

Length

449 amino acids

Sequence
(BLAST)

001: MDDPAAAATA AATEVGAPAS PPPPAAEEAD ASAEAEAVPE AKRWPGWPGD NVFRMVVPVL KVGSIIGRKG ELIKRLVEET KARVRVLEGP VGATERIVLV
101: SAKEDPGLEL PPAVDALIRV FKRVNGITDG AAEGTQTAAA PGVCAARLVV PGAQAINLIG KQGASIKAIQ EGTGATIRVI SVDDRDRPFY VSDDERIVEI
201: QGETEKVLKA LQAVSNHLRK FLVDHSVLPL FEKTNAPVSQ DRSAETWNDM PHHSIVSTQV NQQPEVRDEY VLPMKRDHLY LEREPLVEHN IHRSGVSLYG
301: RDPALSALRP SGMHGAGPLL TQITQTMQIP LTYAEDIIGV KGANIAYIRA NSGAVVTIQE SLGSPDDITV EIKGTSSQVQ SAQQLIQDSL AAHREPVRSS
401: YAGLDPLYRS SYPYGSSAYP SSSLPSYSSM DGSGYSSSGL GGYGSTYRY

Best Arabidopsis Sequence Match ( AT4G26000.1 )
(BLAST)

001: MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL

Arabidopsis Description

PEPRNA-binding KH domain-containing protein PEPPER [Source:UniProtKB/Swiss-Prot;Acc:Q9SZH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.