Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- peroxisome 1
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g043210.1.1 | Tomato | plastid | 63.33 | 52.57 |
| Solyc08g074330.1.1 | Tomato | plastid | 48.57 | 44.93 |
| Solyc05g042180.1.1 | Tomato | plastid | 41.43 | 31.87 |
| PGSC0003DMT400076105 | Potato | plastid | 69.52 | 31.6 |
| Solyc05g043200.1.1 | Tomato | nucleus, peroxisome, plastid | 39.05 | 25.62 |
| Zm00001d029973_P001 | Maize | plasma membrane | 43.81 | 20.54 |
| Solyc06g084010.2.1 | Tomato | nucleus | 31.43 | 20.43 |
| Zm00001d000030_P001 | Maize | cytosol, extracellular, nucleus, plasma membrane | 42.86 | 20.41 |
| EER94472 | Sorghum | cytosol | 43.81 | 20.35 |
| Os02t0125500-00 | Rice | cytosol | 42.38 | 20.27 |
| TraesCS1B01G229900.1 | Wheat | cytosol | 43.33 | 20.27 |
| Os10t0564000-01 | Rice | cytosol | 43.81 | 20.09 |
| Zm00001d015093_P001 | Maize | cytosol | 44.76 | 20.09 |
| TraesCS1D01G218700.1 | Wheat | cytosol | 42.86 | 20.0 |
| TraesCS1A01G216900.1 | Wheat | cytosol | 42.86 | 20.0 |
| Solyc07g008490.2.1 | Tomato | nucleus | 43.81 | 19.09 |
| TraesCS6B01G113100.1 | Wheat | cytosol | 42.38 | 19.06 |
| TraesCS6A01G084000.1 | Wheat | cytosol | 42.38 | 18.58 |
| HORVU1Hr1G055480.1 | Barley | plastid | 43.33 | 18.13 |
| KXG29352 | Sorghum | cytosol | 43.81 | 17.83 |
| HORVU6Hr1G014510.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 41.43 | 17.58 |
| GSMUA_Achr8P14980_001 | Banana | cytosol | 45.24 | 16.96 |
| GSMUA_Achr11P... | Banana | mitochondrion | 44.29 | 16.23 |
| Solyc12g055790.1.1 | Tomato | nucleus | 19.05 | 16.06 |
| Solyc09g066120.2.1 | Tomato | nucleus | 37.62 | 16.06 |
| Solyc01g097010.2.1 | Tomato | nucleus | 22.38 | 12.95 |
| Solyc01g090480.2.1 | Tomato | nucleus | 22.38 | 10.59 |
| Solyc05g007810.2.1 | Tomato | nucleus | 24.29 | 9.59 |
| Solyc02g088120.2.1 | Tomato | nucleus | 23.33 | 9.33 |
| Solyc02g067210.2.1 | Tomato | nucleus | 24.29 | 8.28 |
| Solyc11g010840.1.1 | Tomato | plastid | 21.9 | 7.5 |
| Solyc01g106020.2.1 | Tomato | plastid | 22.38 | 7.28 |
| Solyc08g048500.2.1 | Tomato | nucleus | 18.57 | 6.32 |
| Solyc03g034200.2.1 | Tomato | nucleus | 20.95 | 6.22 |
| Solyc03g082980.2.1 | Tomato | nucleus | 18.1 | 5.69 |
| Solyc04g077060.2.1 | Tomato | nucleus | 11.43 | 5.07 |
| Solyc06g084000.2.1 | Tomato | nucleus | 4.29 | 3.8 |
| Solyc12g055780.1.1 | Tomato | cytosol, nucleus | 0.48 | 0.27 |
Protein Annotations
| EnsemblPlants:Solyc05g041740.1.1 | EnsemblPlantsGene:Solyc05g041740.1 | Gene3D:3.30.310.210 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf | PANTHER:PTHR10288 |
| PANTHER:PTHR10288:SF132 | PFAM:PF00013 | PFscan:PS50084 | SEG:seg | SMART:SM00322 | SUPFAM:SSF54791 |
| UniParc:UPI00027664E6 | UniProt:K4C0F5 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr5:+:53495123..53496069
Molecular Weight (calculated)
22339.8 Da
IEP (calculated)
10.177
GRAVY (calculated)
0.483
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MMYSTVTSSL FAPVIHASSS VAPGIGSEWP GWPGDNVFKL VVPIAKVGGI IGRRGEVVKR MCKETCAIIR VLEGPVSNAN QIVLISGREN PDAEVSPAMD
101: AAIRILKCVA GLNSDDPGAV ATFVSSKLLV ASAQAIHLIG KNGSTISSIQ ERSGVVLRVL PVGFFKIHGE GTKVLNAFDV VVKLLRKFLV HHGMIPVFEK
201: MAILILLTKF
101: AAIRILKCVA GLNSDDPGAV ATFVSSKLLV ASAQAIHLIG KNGSTISSIQ ERSGVVLRVL PVGFFKIHGE GTKVLNAFDV VVKLLRKFLV HHGMIPVFEK
201: MAILILLTKF
001: MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL
Arabidopsis Description
PEPRNA-binding KH domain-containing protein PEPPER [Source:UniProtKB/Swiss-Prot;Acc:Q9SZH4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.