Factsheet for Solyc04g077060.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
endoplasmic reticulum 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012623	Potato	nucleus, plastid	96.41	67.56
VIT_18s0001g08280.t01	Wine grape	cytosol	65.33	44.08
Os01t0235800-01	Rice	cytosol	40.59	41.03
KRH52837	Soybean	plastid	57.72	40.38
KRH62129	Soybean	plastid	57.08	39.82
GSMUA_Achr6P13890_001	Banana	cytosol	50.53	36.49
GSMUA_Achr10P...	Banana	cytosol	48.63	34.74
Solyc12g055780.1.1	Tomato	cytosol, nucleus	21.35	27.3
TraesCS3D01G166400.1	Wheat	cytosol, mitochondrion, nucleus	39.96	26.81
TraesCS3B01G189700.1	Wheat	nucleus	39.75	26.55
EES02175	Sorghum	nucleus, plastid	39.96	26.4
Zm00001d009014_P004	Maize	nucleus	39.32	26.38
TraesCS3A01G158700.1	Wheat	nucleus	39.32	26.38
Solyc05g007810.2.1	Tomato	nucleus	27.48	24.44
HORVU3Hr1G057270.16	Barley	plastid	39.11	23.84
Solyc02g088120.2.1	Tomato	nucleus	24.95	22.48
Solyc01g106020.2.1	Tomato	plastid	30.02	21.98
Solyc02g067210.2.1	Tomato	nucleus	27.48	21.1
Solyc03g082980.2.1	Tomato	nucleus	26.85	19.01
Solyc08g048500.2.1	Tomato	nucleus	24.52	18.8
Solyc11g010840.1.1	Tomato	plastid	22.83	17.62
Solyc03g034200.2.1	Tomato	nucleus	26.0	17.4
Solyc01g097010.2.1	Tomato	nucleus	13.11	17.08
Solyc06g084000.2.1	Tomato	nucleus	7.82	15.61
Solyc07g008490.2.1	Tomato	nucleus	13.95	13.69
Solyc09g066120.2.1	Tomato	nucleus	14.16	13.62
Solyc12g055790.1.1	Tomato	nucleus	6.77	12.85
Solyc05g041740.1.1	Tomato	plastid	5.07	11.43
Solyc01g090480.2.1	Tomato	nucleus	10.57	11.26
Solyc05g042180.1.1	Tomato	plastid	5.07	8.79
Solyc05g043210.1.1	Tomato	plastid	4.65	8.7
Solyc05g043200.1.1	Tomato	nucleus, peroxisome, plastid	4.23	6.25
Solyc08g074330.1.1	Tomato	plastid	2.75	5.73
Solyc06g084010.2.1	Tomato	nucleus	3.38	4.95

Protein Annotations

EnsemblPlants:Solyc04g077060.2.1	EnsemblPlantsGene:Solyc04g077060.2	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
PANTHER:PTHR10288	PANTHER:PTHR10288:SF148	PFAM:PF00013	PFscan:PS50084	SEG:seg	SMART:SM00322
SUPFAM:SSF54791	UniParc:UPI0002766251	UniProt:K4BUE3	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr4:-:62022192..62026863

Molecular Weight (calculated)

50662.4 Da

IEP (calculated)

7.205

GRAVY (calculated)

-0.318

Length

473 amino acids

Sequence
(BLAST)

001: MVGRAEMDGG DEEGNDSSSL IIRLLVLSSQ VGCLLGKSGS VIKKMSSESG SQIRILPRDK LPSCASSSDE LVQISGEHDA VKKALEMVAR QLLESSSGDQ
101: DFLSADAGGP SSQSPRRPLS NRELRPTSAR PYHGQGPASS GGFRVGEAGI PGRMNHIPDA LTFRLLCPDE KVGGIIGKGG SIIKALQHET GCQIKVLEST
201: GDSEDRIIVI SGPAFPDDRI SLPQDAVLRI QSRIFRAAPE NQDNVMVAKL LVFSNQIGCL LGKGGGIIAE MRKSTGAYIR IVGKDQIPKF AAENEEVIQI
301: NGDVEKVHEA LLQITARLQN HYFRDAFPSN PGFLDQVPPF PSHVGRREFS PPPGMFPNIR PPFHKFDALP PHGGFHPHDD RPPFMQNFHR PGVPPHISDR
401: MPSSAPWGSQ GRGEGGGHLG FPDYAGGPRN IGSFGGASNP AVITSTTVEV VVPRSVIPAI YGEGGGCLRQ IYF

Best Arabidopsis Sequence Match ( AT1G51580.1 )
(BLAST)

001: MEFSTSKRPA TTATAAESVH FRLLCPATRT GAIIGKGGSV IRHLQSVTGS KIRVIDDIPV PSEERVVLII APSGKKKDES NVCDSENPGS EEPKQEKGSE
101: CAGTSGGDDE EAPSSAQMAL LRVFERIVFG DDAATVDGDE LDKGESEGLC RMIVRGNQVD YLMSKGGKMI QKIREDSGAI VRISSTDQIP PCAFPGDVVI
201: QMNGKFSSVK KALLLVTNCL QESGAPPTWD ECPFPQPGYP PEYHSMEYHP QWDHPPPNPM PEDVGPFNRP VVEEEVAFRL LCPADKVGSL IGKGGAVVRA
301: LQNESGASIK VSDPTHDSEE RIIVISAREN LERRHSLAQD GVMRVHNRIV EIGFEPSAAV VARLLVHSPY IGRLLGKGGH LISEMRRATG ASIRVFAKDQ
401: ATKYESQHDE IVQVIGNLKT VQDALFQILC RLREAMFPGR LPFQGMGGPP PPFMGPYPEP PPPFGPRQYP ASPDRYHSPV GPFHERHCHG PGFDRPPGPG
501: FDRPPSPMSW TPQPGIDGHP GGMVPPDVNH GFALRNEPIG SENPVMTSAN VEIVIPQAYL GHVYGENCSN LNYIKQVSGA NVVVHDPKAG TTEGLVVVSG
601: TSDQAHFAQS LLHAFILCGQ S

Arabidopsis Description

At1g51580 [Source:UniProtKB/TrEMBL;Acc:Q9C553]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.