Factsheet for Solyc12g055790.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g114850.2.1
Solyc03g116320.2.1
Solyc05g007420.1.1
Solyc05g012040.2.1
Solyc06g030610.1.1
Solyc06g030620.1.1
Solyc06g049010.1.1
Solyc08g060810.2.1
Solyc12g038520.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51580.1	Solyc03g114850.2.1	AT1G69170.1	21798944
AT1G51580.1	Solyc05g012040.2.1	AT1G69170.1	21798944
AT1G51580.1	Solyc12g038520.1.1	AT1G69170.1	21798944
AT1G51580.1	Solyc05g007420.1.1	AT1G69690.1	21798944
AT1G51580.1	Solyc06g030610.1.1	AT2G25490.1	21798944
AT1G51580.1	Solyc06g030620.1.1	AT2G25490.1	21798944
AT1G51580.1	Solyc06g049010.1.1	AT2G25490.1	21798944
AT1G51580.1	Solyc08g060810.2.1	AT2G25490.1	21798944
AT1G51580.1	Solyc03g116320.2.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	52.21	19.29
Solyc05g041740.1.1	Tomato	plastid	16.06	19.05
VIT_09s0054g00450.t01	Wine grape	plastid	51.81	18.32
Solyc06g084010.2.1	Tomato	nucleus	19.68	15.17
Solyc05g007810.2.1	Tomato	nucleus	28.92	13.53
CDY46555	Canola	plastid	31.33	13.43
AT1G51580.1	Thale cress	cytosol, plastid	33.33	13.37
KRH44614	Soybean	mitochondrion, nucleus	30.12	13.27
Bra014290.1-P	Field mustard	plastid	30.92	13.25
CDY52947	Canola	plastid	30.52	13.19
Solyc02g088120.2.1	Tomato	nucleus	27.71	13.14
KRH47290	Soybean	mitochondrion, nucleus	29.32	13.06
Solyc11g010840.1.1	Tomato	plastid	31.73	12.89
Solyc01g106020.2.1	Tomato	plastid	31.33	12.07
Solyc02g067210.2.1	Tomato	nucleus	29.72	12.01
Solyc01g090480.2.1	Tomato	nucleus	20.88	11.71
Solyc08g074330.1.1	Tomato	plastid	10.04	11.01
Solyc05g043210.1.1	Tomato	plastid	10.84	10.67
Solyc07g008490.2.1	Tomato	nucleus	20.48	10.58
Solyc09g066120.2.1	Tomato	nucleus	20.48	10.37
HORVU5Hr1G075110.3	Barley	mitochondrion	26.51	10.25
TraesCS5A01G276800.5	Wheat	plastid	25.7	10.21
TraesCS5B01G276400.1	Wheat	plastid	25.3	10.08
Os09t0498600-01	Rice	plastid	24.9	10.06
TraesCS5D01G284200.4	Wheat	plastid	25.3	10.05
Solyc03g034200.2.1	Tomato	nucleus	28.51	10.04
Solyc03g082980.2.1	Tomato	nucleus	26.1	9.73
KXG35952	Sorghum	plastid	23.29	9.32
Zm00001d006055_P002	Maize	plastid	22.89	9.13
Solyc08g048500.2.1	Tomato	nucleus	22.09	8.91
Solyc01g097010.2.1	Tomato	nucleus	11.65	7.99
Solyc04g077060.2.1	Tomato	nucleus	12.85	6.77
Solyc05g043200.1.1	Tomato	nucleus, peroxisome, plastid	8.43	6.56
Solyc05g042180.1.1	Tomato	plastid	6.83	6.23
PGSC0003DMT400074198	Potato	plastid	4.42	2.48
Solyc12g055780.1.1	Tomato	cytosol, nucleus	1.2	0.81
Solyc06g084000.2.1	Tomato	nucleus	0.0	0.0

Protein Annotations

Gene3D:3.30.1370.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR036612	UniProt:K4DFR0	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013
PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF173	SMART:SM00322	SUPFAM:SSF54791	EnsemblPlantsGene:Solyc12g055790.1
EnsemblPlants:Solyc12g055790.1.1	UniParc:UPI0002769B95	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:-:61765392..61772355

Molecular Weight (calculated)

26758.7 Da

IEP (calculated)

7.413

GRAVY (calculated)

-0.467

Length

249 amino acids

Sequence
(BLAST)

001: MDSSFAHKRH LDTTTAFDTS TPTAKRRHQL LPSSATPPSN SFRTPPPPLP FLKLSPGEAF FRILCPADKT GGVIGKGGAI IRQLREETGA KIRIDDSLAG
101: CDERVIVVIA DSTKKDQTSS DAGGVNGEEL PHSAFNDESS SQAQRALIRV LERILKVDEE GNAVQSEGEG RKDEFSDARS PQGVVICRLL APSNQVGSVL
201: GKGGKIIEKI RQESGAQVRV LPKDQMPACA LPGDELIQTP KTTYKISDC

Best Arabidopsis Sequence Match ( AT1G51580.1 )
(BLAST)

001: MEFSTSKRPA TTATAAESVH FRLLCPATRT GAIIGKGGSV IRHLQSVTGS KIRVIDDIPV PSEERVVLII APSGKKKDES NVCDSENPGS EEPKQEKGSE
101: CAGTSGGDDE EAPSSAQMAL LRVFERIVFG DDAATVDGDE LDKGESEGLC RMIVRGNQVD YLMSKGGKMI QKIREDSGAI VRISSTDQIP PCAFPGDVVI
201: QMNGKFSSVK KALLLVTNCL QESGAPPTWD ECPFPQPGYP PEYHSMEYHP QWDHPPPNPM PEDVGPFNRP VVEEEVAFRL LCPADKVGSL IGKGGAVVRA
301: LQNESGASIK VSDPTHDSEE RIIVISAREN LERRHSLAQD GVMRVHNRIV EIGFEPSAAV VARLLVHSPY IGRLLGKGGH LISEMRRATG ASIRVFAKDQ
401: ATKYESQHDE IVQVIGNLKT VQDALFQILC RLREAMFPGR LPFQGMGGPP PPFMGPYPEP PPPFGPRQYP ASPDRYHSPV GPFHERHCHG PGFDRPPGPG
501: FDRPPSPMSW TPQPGIDGHP GGMVPPDVNH GFALRNEPIG SENPVMTSAN VEIVIPQAYL GHVYGENCSN LNYIKQVSGA NVVVHDPKAG TTEGLVVVSG
601: TSDQAHFAQS LLHAFILCGQ S

Arabidopsis Description

At1g51580 [Source:UniProtKB/TrEMBL;Acc:Q9C553]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.