Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400001613 | Potato | nucleus | 97.31 | 96.14 |
| VIT_17s0000g06020.t01 | Wine grape | nucleus | 68.46 | 76.09 |
| Solyc06g070900.2.1 | Tomato | nucleus | 74.08 | 72.84 |
| KRH56919 | Soybean | nucleus | 66.01 | 64.9 |
| KRH03466 | Soybean | nucleus | 65.04 | 64.41 |
| KRH63357 | Soybean | nucleus | 58.92 | 60.55 |
| GSMUA_Achr4P00500_001 | Banana | nucleus | 40.1 | 60.29 |
| KRH54542 | Soybean | nucleus | 60.15 | 60.29 |
| GSMUA_Achr6P02720_001 | Banana | nucleus | 38.88 | 58.89 |
| Solyc02g094290.1.1 | Tomato | cytosol | 15.89 | 57.52 |
| GSMUA_Achr7P20990_001 | Banana | nucleus | 37.65 | 57.46 |
| CDY36943 | Canola | nucleus | 25.92 | 56.08 |
| CDY24170 | Canola | nucleus | 31.05 | 52.26 |
| Os06t0226700-01 | Rice | nucleus | 46.7 | 49.35 |
| Zm00001d037221_P001 | Maize | cytosol, nucleus, peroxisome | 44.99 | 48.55 |
| Zm00001d052256_P001 | Maize | cytosol, nucleus, peroxisome | 45.48 | 47.81 |
| EER88112 | Sorghum | nucleus | 45.72 | 47.46 |
| GSMUA_Achr7P17990_001 | Banana | nucleus | 38.88 | 47.32 |
| Os02t0747400-01 | Rice | nucleus | 47.19 | 47.07 |
| EES07255 | Sorghum | nucleus | 45.72 | 46.98 |
| TraesCS6D01G285600.1 | Wheat | nucleus | 45.97 | 46.88 |
| TraesCS6A01G306500.1 | Wheat | nucleus | 46.21 | 46.78 |
| TraesCS7B01G091900.1 | Wheat | cytosol, nucleus, peroxisome | 42.54 | 46.77 |
| TraesCS6B01G334900.1 | Wheat | nucleus | 45.97 | 46.77 |
| Zm00001d018045_P001 | Maize | cytosol, nucleus, peroxisome | 45.72 | 46.75 |
| Zm00001d044836_P001 | Maize | nucleus | 40.59 | 46.5 |
| HORVU6Hr1G075650.1 | Barley | nucleus | 45.48 | 46.27 |
| TraesCS7D01G187600.1 | Wheat | cytosol | 44.5 | 45.5 |
| HORVU7Hr1G038130.1 | Barley | nucleus | 43.77 | 44.75 |
| Bra018126.1-P | Field mustard | nucleus | 50.86 | 44.64 |
| AT3G47620.1 | Thale cress | nucleus | 51.59 | 43.15 |
| Solyc05g007420.1.1 | Tomato | nucleus | 37.65 | 40.21 |
| Solyc01g008230.2.1 | Tomato | nucleus | 22.74 | 37.35 |
| Solyc02g068200.1.1 | Tomato | nucleus | 23.47 | 35.29 |
| Solyc04g009180.1.1 | Tomato | nucleus | 22.74 | 34.96 |
| Solyc09g008030.1.1 | Tomato | plastid | 16.38 | 33.33 |
| Solyc06g065190.1.1 | Tomato | nucleus | 26.16 | 32.92 |
| Solyc11g020670.1.1 | Tomato | nucleus | 26.65 | 29.14 |
| Solyc01g103780.2.1 | Tomato | nucleus | 28.85 | 26.52 |
| Solyc03g006800.1.1 | Tomato | nucleus | 20.78 | 26.07 |
| Solyc08g080150.1.1 | Tomato | nucleus | 20.05 | 22.16 |
Protein Annotations
| MapMan:15.5.19 | UniProt:G3BGV6 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008283 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009735 | GO:GO:0009737 | GO:GO:0009739 |
| GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010029 | GO:GO:0010229 | GO:GO:0031347 | EMBL:GQ496334 |
| InterPro:IPR017887 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF40 | EnsemblPlantsGene:Solyc03g116320.2 |
| EnsemblPlants:Solyc03g116320.2.1 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI00022A26AB | SEG:seg | : |
Description
TCP transcription factor 16 [Source:UniProtKB/TrEMBL;Acc:G3BGV6]
Coordinates
chr3:+:65802666..65804165
Molecular Weight (calculated)
43697.5 Da
IEP (calculated)
7.902
GRAVY (calculated)
-0.683
Length
409 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGGDDHLH QRHQHNHRSI ATFPFQLLEK KEDEACSSSS NAAAAYTTSL AISNTDNTHT NPNNTPRSTI STLQISASGA DTSKKPPPKR TSTKDRHTKV
101: DGRGRRIRMP ALCAARVFQL TRELGHKSDG ETIEWLLQQA EPAVIAATGT GTIPANFTSL NISLRSSGSS MSVPSQLRSS YFNPNFSLSQ RRGLFPPGIG
201: LSTDTSATTL LNFQSANLSS NIQLQTKPEL RDNSIDLTES SPAEDNLSRK RRSDLDLEQQ QHQQQQQQMG SYLLQSSTGT MPTSHSSIPA NFWMVTNPIP
301: SNQVMGGDPI WPFQSVSNSG ALYRGTMPSG LQFMNFPTSV ALLPSQQLGG GSSGGGGGNN GLGEGQLGMF AGLNPYRGGG GVSESQASGS HSHHGGGTDD
401: RHDTTSHHS
101: DGRGRRIRMP ALCAARVFQL TRELGHKSDG ETIEWLLQQA EPAVIAATGT GTIPANFTSL NISLRSSGSS MSVPSQLRSS YFNPNFSLSQ RRGLFPPGIG
201: LSTDTSATTL LNFQSANLSS NIQLQTKPEL RDNSIDLTES SPAEDNLSRK RRSDLDLEQQ QHQQQQQQMG SYLLQSSTGT MPTSHSSIPA NFWMVTNPIP
301: SNQVMGGDPI WPFQSVSNSG ALYRGTMPSG LQFMNFPTSV ALLPSQQLGG GSSGGGGGNN GLGEGQLGMF AGLNPYRGGG GVSESQASGS HSHHGGGTDD
401: RHDTTSHHS
001: MQKPTSSILN VIMDGGDSVG GGGGDDHHRH LHHHHRPTFP FQLLGKHDPD DNHQQQPSPS SSSSLFSLHQ HQQLSQSQPQ SQSQKSQPQT TQKELLQTQE
101: ESAVVAAKKP PLKRASTKDR HTKVDGRGRR IRMPALCAAR VFQLTRELGH KSDGETIEWL LQQAEPSVIA ATGTGTIPAN FTSLNISLRS SGSSMSLPSH
201: FRSAASTFSP NNIFSPAMLQ QQQQQQRGGG VGFHHPHLQG RAPTSSLFPG IDNFTPTTSF LNFHNPTKQE GDQDSEELNS EKKRRIQTTS DLHQQQQQHQ
301: HDQIGGYTLQ SSNSGSTATA AAAQQIPGNF WMVAAAAAAG GGGGNNNQTG GLMTASIGTG GGGGEPVWTF PSINTAAAAL YRSGVSGVPS GAVSSGLHFM
401: NFAAPMAFLT GQQQLATTSN HEINEDSNNN EGGRSDGGGD HHNTQRHHHH QQQHHHNILS GLNQYGRQVS GDSQASGSLG GGDEEDQQD
101: ESAVVAAKKP PLKRASTKDR HTKVDGRGRR IRMPALCAAR VFQLTRELGH KSDGETIEWL LQQAEPSVIA ATGTGTIPAN FTSLNISLRS SGSSMSLPSH
201: FRSAASTFSP NNIFSPAMLQ QQQQQQRGGG VGFHHPHLQG RAPTSSLFPG IDNFTPTTSF LNFHNPTKQE GDQDSEELNS EKKRRIQTTS DLHQQQQQHQ
301: HDQIGGYTLQ SSNSGSTATA AAAQQIPGNF WMVAAAAAAG GGGGNNNQTG GLMTASIGTG GGGGEPVWTF PSINTAAAAL YRSGVSGVPS GAVSSGLHFM
401: NFAAPMAFLT GQQQLATTSN HEINEDSNNN EGGRSDGGGD HHNTQRHHHH QQQHHHNILS GLNQYGRQVS GDSQASGSLG GGDEEDQQD
Arabidopsis Description
TCP14Transcription factor TCP14 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z00]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.