Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400059978 | Potato | nucleus | 96.7 | 96.7 |
| Solyc05g056210.2.1 | Tomato | nucleus | 83.13 | 82.91 |
| VIT_16s0050g00820.t01 | Wine grape | nucleus | 65.26 | 58.12 |
| KRH35254 | Soybean | nucleus | 55.36 | 54.81 |
| KRG91570 | Soybean | nucleus | 55.0 | 54.64 |
| Os01t0267100-01 | Rice | nucleus | 36.48 | 52.09 |
| EER92855 | Sorghum | nucleus | 37.21 | 50.5 |
| GSMUA_Achr5P10590_001 | Banana | nucleus | 42.44 | 50.44 |
| CDX99517 | Canola | nucleus | 41.7 | 50.0 |
| Zm00001d027671_P001 | Maize | nucleus | 36.76 | 49.63 |
| TraesCS4A01G413300.1 | Wheat | nucleus | 35.56 | 48.8 |
| AT4G09980.1 | Thale cress | nucleus | 42.71 | 48.39 |
| TraesCS4B01G314000.1 | Wheat | nucleus | 35.56 | 48.38 |
| Bra037896.1-P | Field mustard | nucleus | 40.97 | 47.96 |
| CDX86882 | Canola | nucleus | 40.05 | 47.76 |
| HORVU4Hr1G079900.1 | Barley | nucleus | 34.83 | 47.09 |
| Os03t0147700-01 | Rice | nucleus | 28.96 | 46.68 |
| Os10t0447600-01 | Rice | nucleus | 41.61 | 44.82 |
| TraesCS4D01G311200.2 | Wheat | nucleus | 36.02 | 44.46 |
| Solyc08g066730.2.1 | Tomato | nucleus | 11.46 | 16.91 |
Protein Annotations
| MapMan:16.5.1.1.2 | InterPro:DNA_methylase_N6_adenine_CS | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0032259 | InterPro:IPR007757 | UniProt:K4C2U6 | InterPro:MT-A70-like | PFAM:PF05063 | ScanProsite:PS00092 |
| PFscan:PS51143 | PFscan:PS51592 | PANTHER:PTHR13107 | PANTHER:PTHR13107:SF1 | InterPro:SAM-dependent_MTases | SUPFAM:SSF53335 |
| EnsemblPlantsGene:Solyc05g056220.2 | EnsemblPlants:Solyc05g056220.2.1 | UniParc:UPI00027656FF | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5:-:65577084..65584119
Molecular Weight (calculated)
121991.0 Da
IEP (calculated)
6.811
GRAVY (calculated)
-1.143
Length
1091 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTSPERVRSY PKQDDTDLKL DDDWEGDDKR KCRSSNPRSG NSEEAEGLDS NGRRRSTVDR NESRKRSGGS SKTDIDEDDY EGNDLRSKLM KKKQGENTLE
0101: TLSNWYRDGE LGGKYDNGDR AGDRGQFLAN ESVRRKSTSR FSDGDGSQTR NQGKNEKLLG GDSENATERD SRRLERKDST KEKDNVQLDS LKNSNGDKNN
0201: TYPESSEIKT DSDRSKKVRL YAIGEDNGGT SSIREDKLSL ERVEEHRQIR SATTHHTAES HERSMVAGDD GGSLVRERKR REMDSSDRSR TPERSGRRRY
0301: DSESVEMEYE KRDTFRRKEQ EKDGVRDDKS KGRDDGRSDR NRIRDGSKDG WKRRQGSFVD KEMKEGETPY EHGREWEIPR RGWIDNERPR SGGRKDGNRT
0401: EALKTSSKYG ISNDNYDVIE IQTRPFDYGR EEAISSAART TEVNQSSDAK SLPDDENYAR EGRGRNMNWS GQSGPDLRDT SGDSSNKDET EARGQKGDAS
0501: IQSAWGQTSS SEPSYVNQEP PSFNRSVPIG SKGGRVGRGG RGRPTGRDVH QFGPPMPMMG SPFGPLGMPS PGSVQSLAPN MSPAPGPPMS PFIPPFSSPL
0601: VWPGARGVEM NMLGVPPGLP PVLPGPGFPP NLGNLPNHAM YFNQLGPGRG TPPSMSGSNF NALIPGGRGQ VKDKANAGWV PSRTNAPPGK APSRGEQNDY
0701: SQNFVDTGTR PQNFIRELEL TSVIEDYPKL RELIQRKDEI VVKSSSSPMY YKCDLHEQEL SPEFFGTKFD VILIDPPWEE YVHRAPGVTD HMAYWTFEEI
0801: MNLKIEAIAD TPSFVFLWVG DGVGLEQGRQ CLKKWGFRRC EDICWVKTNK TTATPGLRHD SHTLLQHTKE HCLLGIKGTV RRSTDGHIIH ANIDTDVIIA
0901: EEPPYGSSAK PEDMYRIIEH FALGRRRLEL FGEDHNIRSG WLTVGNGLSS SNFSAEAYVR NFADRDGKVW QGGGGRNPPP DAPHLVVTTP EIEALRPKSP
1001: MKNQQHQSSS ISMTTNNTSN KRATGNSPQN NTNSQNPIQE TSSSNNPNSG PWAPPMEIFP GREDGHMISD NRLFDMYGYN AAFRQTNSEF L
0101: TLSNWYRDGE LGGKYDNGDR AGDRGQFLAN ESVRRKSTSR FSDGDGSQTR NQGKNEKLLG GDSENATERD SRRLERKDST KEKDNVQLDS LKNSNGDKNN
0201: TYPESSEIKT DSDRSKKVRL YAIGEDNGGT SSIREDKLSL ERVEEHRQIR SATTHHTAES HERSMVAGDD GGSLVRERKR REMDSSDRSR TPERSGRRRY
0301: DSESVEMEYE KRDTFRRKEQ EKDGVRDDKS KGRDDGRSDR NRIRDGSKDG WKRRQGSFVD KEMKEGETPY EHGREWEIPR RGWIDNERPR SGGRKDGNRT
0401: EALKTSSKYG ISNDNYDVIE IQTRPFDYGR EEAISSAART TEVNQSSDAK SLPDDENYAR EGRGRNMNWS GQSGPDLRDT SGDSSNKDET EARGQKGDAS
0501: IQSAWGQTSS SEPSYVNQEP PSFNRSVPIG SKGGRVGRGG RGRPTGRDVH QFGPPMPMMG SPFGPLGMPS PGSVQSLAPN MSPAPGPPMS PFIPPFSSPL
0601: VWPGARGVEM NMLGVPPGLP PVLPGPGFPP NLGNLPNHAM YFNQLGPGRG TPPSMSGSNF NALIPGGRGQ VKDKANAGWV PSRTNAPPGK APSRGEQNDY
0701: SQNFVDTGTR PQNFIRELEL TSVIEDYPKL RELIQRKDEI VVKSSSSPMY YKCDLHEQEL SPEFFGTKFD VILIDPPWEE YVHRAPGVTD HMAYWTFEEI
0801: MNLKIEAIAD TPSFVFLWVG DGVGLEQGRQ CLKKWGFRRC EDICWVKTNK TTATPGLRHD SHTLLQHTKE HCLLGIKGTV RRSTDGHIIH ANIDTDVIIA
0901: EEPPYGSSAK PEDMYRIIEH FALGRRRLEL FGEDHNIRSG WLTVGNGLSS SNFSAEAYVR NFADRDGKVW QGGGGRNPPP DAPHLVVTTP EIEALRPKSP
1001: MKNQQHQSSS ISMTTNNTSN KRATGNSPQN NTNSQNPIQE TSSSNNPNSG PWAPPMEIFP GREDGHMISD NRLFDMYGYN AAFRQTNSEF L
001: MKKKQEESSL EKLSTWYQDG EQDGGDRSEK RRMSLKASDF ESSSRSGGSK SKEDNKSVVD VEHQDRDSKR ERDGRERTHG SSSDSSKRKR WDEAGGLVND
101: GDHKSSKLSD SRHDSGGERV SVSNEHGESR RDLKSDRSLK TSSRDEKSKS RGVKDDDRGS PLKKTSGKDG SEVVREVGRS NRSKTPDADY EKEKYSRKDE
201: RSRGRDDGWS DRDRDQEGLK DNWKRRHSSS GDKDQKDGDL LYDRGREREF PRQGRERSEG ERSHGRLGGR KDGNRGEAVK ALSSGGVSNE NYDVIEIQTK
301: PHDYVRGESG PNFARMTESG QQPPKKPSNN EEEWAHNQEG RQRSETFGFG SYGEDSRDEA GEASSDYSGA KARNQRGSTP GRTNFVQTPN RGYQTPQGTR
401: GNRPLRGGKG RPAGGRENQQ GAIPMPIMGS PFANLGMPPP SPIHSLTPGM SPIPGTSVTP VFMPPFAPTL IWPGARGVDG NMLPVPPVLS PLPPGPSGPR
501: FPSIGTPPNP NMFFTPPGSD RGGPPNFPGS NISGQMGRGM PSDKTSGGWV PPRGGGPPGK APSRGEQNDY SQNFVDTGMR PQNFIRELEL TNVEDYPKLR
601: ELIQKKDEIV SNSASAPMYL KGDLHEVELS PELFGTKFDV ILVDPPWEEY VHRAPGVSDS MEYWTFEDII NLKIEAIADT PSFLFLWVGD GVGLEQGRQC
701: LKKWGFRRCE DICWVKTNKS NAAPTLRHDS RTVFQRSKEH CLMGIKGTVR RSTDGHIIHA NIDTDVIIAE EPPYGSTQKP EDMYRIIEHF ALGRRRLELF
801: GEDHNIRAGW LTVGKGLSSS NFEPQAYVRN FADKEGKVWL GGGGRNPPPD APHLVVTTPD IESLRPKSPM KNQQQQSYPS SLASANSSNR RTTGNSPQAN
901: PNVVVLHQEA SGSNFSVPTT PHWVPPTAPA AAGPPPMDSF RVPEGGNNTR PPDDKSFDMY GFN
101: GDHKSSKLSD SRHDSGGERV SVSNEHGESR RDLKSDRSLK TSSRDEKSKS RGVKDDDRGS PLKKTSGKDG SEVVREVGRS NRSKTPDADY EKEKYSRKDE
201: RSRGRDDGWS DRDRDQEGLK DNWKRRHSSS GDKDQKDGDL LYDRGREREF PRQGRERSEG ERSHGRLGGR KDGNRGEAVK ALSSGGVSNE NYDVIEIQTK
301: PHDYVRGESG PNFARMTESG QQPPKKPSNN EEEWAHNQEG RQRSETFGFG SYGEDSRDEA GEASSDYSGA KARNQRGSTP GRTNFVQTPN RGYQTPQGTR
401: GNRPLRGGKG RPAGGRENQQ GAIPMPIMGS PFANLGMPPP SPIHSLTPGM SPIPGTSVTP VFMPPFAPTL IWPGARGVDG NMLPVPPVLS PLPPGPSGPR
501: FPSIGTPPNP NMFFTPPGSD RGGPPNFPGS NISGQMGRGM PSDKTSGGWV PPRGGGPPGK APSRGEQNDY SQNFVDTGMR PQNFIRELEL TNVEDYPKLR
601: ELIQKKDEIV SNSASAPMYL KGDLHEVELS PELFGTKFDV ILVDPPWEEY VHRAPGVSDS MEYWTFEDII NLKIEAIADT PSFLFLWVGD GVGLEQGRQC
701: LKKWGFRRCE DICWVKTNKS NAAPTLRHDS RTVFQRSKEH CLMGIKGTVR RSTDGHIIHA NIDTDVIIAE EPPYGSTQKP EDMYRIIEHF ALGRRRLELF
801: GEDHNIRAGW LTVGKGLSSS NFEPQAYVRN FADKEGKVWL GGGGRNPPPD APHLVVTTPD IESLRPKSPM KNQQQQSYPS SLASANSSNR RTTGNSPQAN
901: PNVVVLHQEA SGSNFSVPTT PHWVPPTAPA AAGPPPMDSF RVPEGGNNTR PPDDKSFDMY GFN
Arabidopsis Description
EMB1691EMB1691 [Source:UniProtKB/TrEMBL;Acc:A0A178V0G2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.