Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400059980 | Potato | nucleus | 95.06 | 94.12 |
| Solyc05g056220.2.1 | Tomato | nucleus | 82.91 | 83.13 |
| VIT_16s0050g00820.t01 | Wine grape | nucleus | 64.9 | 57.96 |
| KRH35254 | Soybean | nucleus | 55.3 | 54.9 |
| KRG91570 | Soybean | nucleus | 55.03 | 54.83 |
| Os01t0267100-01 | Rice | nucleus | 35.92 | 51.44 |
| GSMUA_Achr5P10590_001 | Banana | nucleus | 42.41 | 50.54 |
| EER92855 | Sorghum | nucleus | 36.56 | 49.75 |
| CDX99517 | Canola | nucleus | 41.04 | 49.34 |
| Zm00001d027671_P001 | Maize | nucleus | 36.2 | 49.01 |
| TraesCS4A01G413300.1 | Wheat | nucleus | 35.28 | 48.55 |
| TraesCS4B01G314000.1 | Wheat | nucleus | 35.19 | 48.01 |
| Bra037896.1-P | Field mustard | nucleus | 40.59 | 47.64 |
| AT4G09980.1 | Thale cress | nucleus | 41.86 | 47.56 |
| HORVU4Hr1G079900.1 | Barley | nucleus | 34.92 | 47.34 |
| CDX86882 | Canola | nucleus | 39.58 | 47.32 |
| Os03t0147700-01 | Rice | nucleus | 28.25 | 45.64 |
| Os10t0447600-01 | Rice | nucleus | 41.5 | 44.82 |
| TraesCS4D01G311200.2 | Wheat | nucleus | 35.65 | 44.12 |
| Solyc08g066730.2.1 | Tomato | nucleus | 10.97 | 16.24 |
Protein Annotations
| MapMan:16.5.1.1.2 | InterPro:DNA_methylase_N6_adenine_CS | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0032259 | InterPro:IPR007757 | UniProt:K4C2U5 | InterPro:MT-A70-like | PFAM:PF05063 | ScanProsite:PS00092 |
| PFscan:PS51143 | PFscan:PS51592 | PANTHER:PTHR13107 | PANTHER:PTHR13107:SF1 | InterPro:SAM-dependent_MTases | SUPFAM:SSF53335 |
| EnsemblPlantsGene:Solyc05g056210.2 | EnsemblPlants:Solyc05g056210.2.1 | UniParc:UPI00027656FE | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5:-:65569184..65575429
Molecular Weight (calculated)
122635.0 Da
IEP (calculated)
6.757
GRAVY (calculated)
-1.147
Length
1094 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASPERRRSY LKQDDPNLKL EDDWEGDDKR KYRSSKSRPG NSEEAEGLDS NGRRRSTLER NESRKRSVGS SIADIDEDDY EAENDLRSKL TKKKQGENTL
0101: ETLSNWYRDG ELGGKYDNGD KTGDRGQILA NEGVRRKSTS RFSDGDGSQT RNKGNNEKLH GGDSGNALER DSRHLERKDS TTERGHVLLD SLEESNRDKN
0201: GKYPESDERK IDCDRSKKGR SYAIEEDRGG AFSIRDDKLS IERFEEHRQR KGATSHDIAE NRDRSAAAGD DGGSRVRERT RRELDSSDRS RTPEKDGRRH
0301: YNLESVEMEY EKRDTFRRKE QEKDGARDDK SKGRDDGRSD RNRFRDGSKD GWKRRQGNFV DKEIKEGETS YEHGREWEMP RRGWIDNERP RSGGRKDGNR
0401: TEALKTSSKY GISNENYDVI EIQTRPFDYD KEKAISAVAR TTEFNQNFDA RLLPDDDNNA FPRDDRGRNM NWSGQSAQDI KNTSGDGSYR DETESRPQKG
0501: DASVRSALGQ TSNSASEPPY GNQEPSSFNR DVPMGSKGSR VGRGGRGRPT GRDGHQFGPP MPMMGSPFGP LGMPSPGTLQ SLAPNMSPAP GPLPGVFIPP
0601: FSPPVVWPGA RGLEMNMLGV PPGLSPVLPG TGFPPNLGNP MYFNQSGPGR GTPPNMSGPN FNGLIPGGRG QVKDKANAGW VPPRTNAPPG KAPSRGEQND
0701: YSQNFVDTGT RPQNFIRELE LTSVVEDYPK LRELIQRKDE IVVNSSSPPM YFKCDLLEHE LSPDFFGTKF DVILIDPPWE EYVHRAPGVT DHMEYWTFEE
0801: IMNLKIEAIA DTPSFVFLWV GDGVGLEQGR QCLKKWGFRR CEDICWVKTN KTNATPGLRH DSHTLFQHTK EHCLLGIKGT VRRSTDGHII HANIDTDVII
0901: AEEPPYGSTV KPEDMYRIIE HFALGRRRLE LFGEDHNIRS GWLTVGKGLS SSNFSAETYV RNFADRDGKV WQGGGGRNPP PGAAHLVITT PEIESLRPKS
1001: PMKNQQQQTA SISVMTTNSS NKRPAGNSPQ NSQNVNQEAS SSNNPNAGPW VPSMESFQGG HVISDNNMYG YNTAFTQNNT ESSDYESHNA MNLF
0101: ETLSNWYRDG ELGGKYDNGD KTGDRGQILA NEGVRRKSTS RFSDGDGSQT RNKGNNEKLH GGDSGNALER DSRHLERKDS TTERGHVLLD SLEESNRDKN
0201: GKYPESDERK IDCDRSKKGR SYAIEEDRGG AFSIRDDKLS IERFEEHRQR KGATSHDIAE NRDRSAAAGD DGGSRVRERT RRELDSSDRS RTPEKDGRRH
0301: YNLESVEMEY EKRDTFRRKE QEKDGARDDK SKGRDDGRSD RNRFRDGSKD GWKRRQGNFV DKEIKEGETS YEHGREWEMP RRGWIDNERP RSGGRKDGNR
0401: TEALKTSSKY GISNENYDVI EIQTRPFDYD KEKAISAVAR TTEFNQNFDA RLLPDDDNNA FPRDDRGRNM NWSGQSAQDI KNTSGDGSYR DETESRPQKG
0501: DASVRSALGQ TSNSASEPPY GNQEPSSFNR DVPMGSKGSR VGRGGRGRPT GRDGHQFGPP MPMMGSPFGP LGMPSPGTLQ SLAPNMSPAP GPLPGVFIPP
0601: FSPPVVWPGA RGLEMNMLGV PPGLSPVLPG TGFPPNLGNP MYFNQSGPGR GTPPNMSGPN FNGLIPGGRG QVKDKANAGW VPPRTNAPPG KAPSRGEQND
0701: YSQNFVDTGT RPQNFIRELE LTSVVEDYPK LRELIQRKDE IVVNSSSPPM YFKCDLLEHE LSPDFFGTKF DVILIDPPWE EYVHRAPGVT DHMEYWTFEE
0801: IMNLKIEAIA DTPSFVFLWV GDGVGLEQGR QCLKKWGFRR CEDICWVKTN KTNATPGLRH DSHTLFQHTK EHCLLGIKGT VRRSTDGHII HANIDTDVII
0901: AEEPPYGSTV KPEDMYRIIE HFALGRRRLE LFGEDHNIRS GWLTVGKGLS SSNFSAETYV RNFADRDGKV WQGGGGRNPP PGAAHLVITT PEIESLRPKS
1001: PMKNQQQQTA SISVMTTNSS NKRPAGNSPQ NSQNVNQEAS SSNNPNAGPW VPSMESFQGG HVISDNNMYG YNTAFTQNNT ESSDYESHNA MNLF
001: MKKKQEESSL EKLSTWYQDG EQDGGDRSEK RRMSLKASDF ESSSRSGGSK SKEDNKSVVD VEHQDRDSKR ERDGRERTHG SSSDSSKRKR WDEAGGLVND
101: GDHKSSKLSD SRHDSGGERV SVSNEHGESR RDLKSDRSLK TSSRDEKSKS RGVKDDDRGS PLKKTSGKDG SEVVREVGRS NRSKTPDADY EKEKYSRKDE
201: RSRGRDDGWS DRDRDQEGLK DNWKRRHSSS GDKDQKDGDL LYDRGREREF PRQGRERSEG ERSHGRLGGR KDGNRGEAVK ALSSGGVSNE NYDVIEIQTK
301: PHDYVRGESG PNFARMTESG QQPPKKPSNN EEEWAHNQEG RQRSETFGFG SYGEDSRDEA GEASSDYSGA KARNQRGSTP GRTNFVQTPN RGYQTPQGTR
401: GNRPLRGGKG RPAGGRENQQ GAIPMPIMGS PFANLGMPPP SPIHSLTPGM SPIPGTSVTP VFMPPFAPTL IWPGARGVDG NMLPVPPVLS PLPPGPSGPR
501: FPSIGTPPNP NMFFTPPGSD RGGPPNFPGS NISGQMGRGM PSDKTSGGWV PPRGGGPPGK APSRGEQNDY SQNFVDTGMR PQNFIRELEL TNVEDYPKLR
601: ELIQKKDEIV SNSASAPMYL KGDLHEVELS PELFGTKFDV ILVDPPWEEY VHRAPGVSDS MEYWTFEDII NLKIEAIADT PSFLFLWVGD GVGLEQGRQC
701: LKKWGFRRCE DICWVKTNKS NAAPTLRHDS RTVFQRSKEH CLMGIKGTVR RSTDGHIIHA NIDTDVIIAE EPPYGSTQKP EDMYRIIEHF ALGRRRLELF
801: GEDHNIRAGW LTVGKGLSSS NFEPQAYVRN FADKEGKVWL GGGGRNPPPD APHLVVTTPD IESLRPKSPM KNQQQQSYPS SLASANSSNR RTTGNSPQAN
901: PNVVVLHQEA SGSNFSVPTT PHWVPPTAPA AAGPPPMDSF RVPEGGNNTR PPDDKSFDMY GFN
101: GDHKSSKLSD SRHDSGGERV SVSNEHGESR RDLKSDRSLK TSSRDEKSKS RGVKDDDRGS PLKKTSGKDG SEVVREVGRS NRSKTPDADY EKEKYSRKDE
201: RSRGRDDGWS DRDRDQEGLK DNWKRRHSSS GDKDQKDGDL LYDRGREREF PRQGRERSEG ERSHGRLGGR KDGNRGEAVK ALSSGGVSNE NYDVIEIQTK
301: PHDYVRGESG PNFARMTESG QQPPKKPSNN EEEWAHNQEG RQRSETFGFG SYGEDSRDEA GEASSDYSGA KARNQRGSTP GRTNFVQTPN RGYQTPQGTR
401: GNRPLRGGKG RPAGGRENQQ GAIPMPIMGS PFANLGMPPP SPIHSLTPGM SPIPGTSVTP VFMPPFAPTL IWPGARGVDG NMLPVPPVLS PLPPGPSGPR
501: FPSIGTPPNP NMFFTPPGSD RGGPPNFPGS NISGQMGRGM PSDKTSGGWV PPRGGGPPGK APSRGEQNDY SQNFVDTGMR PQNFIRELEL TNVEDYPKLR
601: ELIQKKDEIV SNSASAPMYL KGDLHEVELS PELFGTKFDV ILVDPPWEEY VHRAPGVSDS MEYWTFEDII NLKIEAIADT PSFLFLWVGD GVGLEQGRQC
701: LKKWGFRRCE DICWVKTNKS NAAPTLRHDS RTVFQRSKEH CLMGIKGTVR RSTDGHIIHA NIDTDVIIAE EPPYGSTQKP EDMYRIIEHF ALGRRRLELF
801: GEDHNIRAGW LTVGKGLSSS NFEPQAYVRN FADKEGKVWL GGGGRNPPPD APHLVVTTPD IESLRPKSPM KNQQQQSYPS SLASANSSNR RTTGNSPQAN
901: PNVVVLHQEA SGSNFSVPTT PHWVPPTAPA AAGPPPMDSF RVPEGGNNTR PPDDKSFDMY GFN
Arabidopsis Description
EMB1691EMB1691 [Source:UniProtKB/TrEMBL;Acc:A0A178V0G2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.