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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
nucleus: 18203134
msms PMID: 18203134 doi
G Li, BR Nallamilli, F Tan, Z Peng
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os03t0147700-01 Rice nucleus 73.43 82.87
EER92855 Sorghum nucleus 72.25 68.66
TraesCS4A01G413300.1 Wheat nucleus 70.81 68.05
TraesCS4B01G314000.1 Wheat nucleus 71.34 67.96
Zm00001d027671_P001 Maize nucleus 70.68 66.83
HORVU4Hr1G079900.1 Barley nucleus 70.03 66.29
TraesCS4D01G311200.2 Wheat nucleus 71.07 61.43
Os10t0447600-01 Rice nucleus 66.88 50.44
GSMUA_Achr5P10590_001 Banana nucleus 59.95 49.89
CDX99517 Canola nucleus 51.05 42.86
CDX86882 Canola nucleus 50.79 42.4
Bra037896.1-P Field mustard nucleus 51.57 42.27
AT4G09980.1 Thale cress nucleus 50.92 40.39
PGSC0003DMT400059978 Potato nucleus 52.09 36.48
Solyc05g056220.2.1 Tomato nucleus 52.09 36.48
KRG91570 Soybean nucleus 52.36 36.43
KRH35254 Soybean nucleus 52.49 36.39
PGSC0003DMT400059980 Potato nucleus 51.96 35.93
Solyc05g056210.2.1 Tomato nucleus 51.44 35.92
VIT_16s0050g00820.t01 Wine grape nucleus 54.58 34.04
Os02t0672600-01 Rice nucleus 16.1 17.42
Protein Annotations
MapMan:16.5.1.1.2EntrezGene:4324378EMBL:AK065023ProteinID:BAF04596.1ProteinID:BAS71472.1InterPro:DNA_methylase_N6_adenine_CS
GO:GO:0003674GO:GO:0003676GO:GO:0003824GO:GO:0005488GO:GO:0008150GO:GO:0008152
GO:GO:0008168GO:GO:0016740GO:GO:0032259InterPro:IPR007757InterPro:MT-A70-likeEnsemblPlantsGene:Os01g0267100
EnsemblPlants:Os01t0267100-01PFAM:PF05063ScanProsite:PS00092PFscan:PS51143PFscan:PS51592PANTHER:PTHR13107
PANTHER:PTHR13107:SF1UniProt:Q0JNT2InterPro:SAM-dependent_MTasesSUPFAM:SSF53335UniParc:UPI0000DD8A76RefSeq:XP_015619371.1
RefSeq:XP_015619381.1SEG:seg::::
Description
MT-A70 family protein. (Os01t0267100-01)
Coordinates
chr1:+:9159753..9165677
Molecular Weight (calculated)
85304.3 Da
IEP (calculated)
7.228
GRAVY (calculated)
-0.940
Length
764 amino acids
Sequence
(BLAST)
001: MFLQLADYHL RMDSRSPKIP RRSPDSKDKD SDRNKERDAK NDWDSSRAYG SETDCKEEMC DSNKRKGLTM GEIVVDNSRS VDSCHETELH VLRDDRQDKS
101: VEIKDILHDG VAKSDYAQRQ IDLDSERRNG TGDNSRVDVL RDDKLDSGRD RNWSDRTREP EGSKDYVRNR QWQDSKEAND SEWKNAHERL DGGSFHGRAG
201: YRRDSRGRSE SIRGSSTYGG RYDSSDSIEI RPNNNLDFGR EGSVSGRRYD VGAHRDATPG TNGDKSANPE ADQSGSTSTI SQFPQHGPKG DRSSRGRGRP
301: NSRDSQRVGG TLPIMPPPFG PLGLPPGPMQ HIGPNIPHSP GPLLPGVFVP PFPGPLVWPG ARGVDVNMLS VPPNLPIPPV AAEHRFAPSM GAGPGHNIHL
401: NQIGSGIGAP TNVSGLSFHQ LGTQSREMAH DKPPAGGGWT PHRNSGPTRK APSRGEQNDY SQNFVDTGMR PQNFIRELDL TSVAEDYPKL RELIQRKDEI
501: VANSASPPMY YKCDLRQHVL SPEFFGTKFD VILVDPPWEE YVHRAPGITD HIEYWNAEEI MNLKIEAIAD TPSFVFLWVG DGVGLEQGRQ CLKKWGFRRC
601: EDVCWVKTNK KNATPSLRHD SHTILQHSKE HCLMGIKGTV RRSTDGHVIH ANIDTDIIIA EEPTDGSTKK PEDMYRIIEH FALGKRRLEL FGEDHNIRPG
701: WLTLGKGLSY SNFNKEAYIK NFADKDGKVW QGGGGRNPPP EAPHLVVTTP EIEGLRPKSP PQKN
Best Arabidopsis Sequence Match ( AT4G09980.1 )
(BLAST)
001: MKKKQEESSL EKLSTWYQDG EQDGGDRSEK RRMSLKASDF ESSSRSGGSK SKEDNKSVVD VEHQDRDSKR ERDGRERTHG SSSDSSKRKR WDEAGGLVND
101: GDHKSSKLSD SRHDSGGERV SVSNEHGESR RDLKSDRSLK TSSRDEKSKS RGVKDDDRGS PLKKTSGKDG SEVVREVGRS NRSKTPDADY EKEKYSRKDE
201: RSRGRDDGWS DRDRDQEGLK DNWKRRHSSS GDKDQKDGDL LYDRGREREF PRQGRERSEG ERSHGRLGGR KDGNRGEAVK ALSSGGVSNE NYDVIEIQTK
301: PHDYVRGESG PNFARMTESG QQPPKKPSNN EEEWAHNQEG RQRSETFGFG SYGEDSRDEA GEASSDYSGA KARNQRGSTP GRTNFVQTPN RGYQTPQGTR
401: GNRPLRGGKG RPAGGRENQQ GAIPMPIMGS PFANLGMPPP SPIHSLTPGM SPIPGTSVTP VFMPPFAPTL IWPGARGVDG NMLPVPPVLS PLPPGPSGPR
501: FPSIGTPPNP NMFFTPPGSD RGGPPNFPGS NISGQMGRGM PSDKTSGGWV PPRGGGPPGK APSRGEQNDY SQNFVDTGMR PQNFIRELEL TNVEDYPKLR
601: ELIQKKDEIV SNSASAPMYL KGDLHEVELS PELFGTKFDV ILVDPPWEEY VHRAPGVSDS MEYWTFEDII NLKIEAIADT PSFLFLWVGD GVGLEQGRQC
701: LKKWGFRRCE DICWVKTNKS NAAPTLRHDS RTVFQRSKEH CLMGIKGTVR RSTDGHIIHA NIDTDVIIAE EPPYGSTQKP EDMYRIIEHF ALGRRRLELF
801: GEDHNIRAGW LTVGKGLSSS NFEPQAYVRN FADKEGKVWL GGGGRNPPPD APHLVVTTPD IESLRPKSPM KNQQQQSYPS SLASANSSNR RTTGNSPQAN
901: PNVVVLHQEA SGSNFSVPTT PHWVPPTAPA AAGPPPMDSF RVPEGGNNTR PPDDKSFDMY GFN
Arabidopsis Description
EMB1691EMB1691 [Source:UniProtKB/TrEMBL;Acc:A0A178V0G2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.